![[Jenkins]](/jenkins/static/57c8a776/images/svgs/logo.svg){kind=logo}
Started by user benjamin.andrew.stephens Checking out git https://github.com/larson-group/e3sm.git into /home/jenkins/workspace/branch_e3sm_test@script/4cc6f52cf1e9dad06d4feb0210516eb0ecc60bc43393533bf86f627dc2ffd28f to read jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/branch_e3sm_test@script/4cc6f52cf1e9dad06d4feb0210516eb0ecc60bc43393533bf86f627dc2ffd28f # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/e3sm_mono2^{commit} # timeout=10 Checking out Revision a24e4e5c38e067676944af2a80b463dd1c2acdd3 (refs/remotes/origin/e3sm_mono2) > git config core.sparsecheckout # timeout=10 > git checkout -f a24e4e5c38e067676944af2a80b463dd1c2acdd3 # timeout=10 Commit message: "testing" First time build. Skipping changelog. [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_e3sm_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/branch_e3sm_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/e3sm_mono2^{commit} # timeout=10 Checking out Revision a24e4e5c38e067676944af2a80b463dd1c2acdd3 (refs/remotes/origin/e3sm_mono2) > git config core.sparsecheckout # timeout=10 > git checkout -f a24e4e5c38e067676944af2a80b463dd1c2acdd3 # timeout=10 Commit message: "testing" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + rm -f /home/jenkins/test_logs/e3sm_run_gfortran_test/atm.log.221014-031519 /home/jenkins/test_logs/e3sm_run_gfortran_test/atm.log.221014-032438 /home/jenkins/test_logs/e3sm_run_gfortran_test/atm.log.221014-033621 /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.bldlog.221014-030512 /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.bldlog.221014-031533 /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.bldlog.221014-032451 /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.log.221014-031519 /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.log.221014-032438 /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.log.221014-033621 + git submodule init Submodule 'cime' (https://github.com/ESMCI/cime.git) registered for path 'cime' Submodule 'cosp2' (git@github.com:CFMIP/COSPv2.0.git) registered for path 'components/eam/src/physics/cosp2/external' Submodule 'rrtmgp' (git@github.com:RobertPincus/rte-rrtmgp.git) registered for path 'components/eam/src/physics/rrtmgp/external' Submodule 'fates' (git@github.com:NGEET/fates.git) registered for path 'components/elm/src/external_models/fates' Submodule 'alm-mpp' (git@github.com:MPP-LSM/MPP.git) registered for path 'components/elm/src/external_models/mpp' Submodule 'sbetr' (git@github.com:BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/elm/src/external_models/sbetr' Submodule 'components/mpas-source' (https://github.com/MPAS-Dev/MPAS-Model.git) registered for path 'components/mpas-source' Submodule 'externals/YAKL' (git@github.com:mrnorman/YAKL.git) registered for path 'externals/YAKL' Submodule 'externals/cub' (git@github.com:NVlabs/cub.git) registered for path 'externals/cub' Submodule 'externals/kokkos' (https://github.com/E3SM-Project/kokkos.git) registered for path 'externals/kokkos' Submodule 'externals/scorpio' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio' Submodule 'externals/scorpio_classic' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio_classic' + git submodule update Cloning into '/home/jenkins/workspace/branch_e3sm_test/cime'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cosp2/external'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmgp/external'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/mpas-source'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/YAKL'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/cub'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/kokkos'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/scorpio'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/scorpio_classic'... Submodule path 'cime': checked out '2b49cf54f1fb0a53832762dc29f19fc31c491d31' Submodule path 'components/eam/src/physics/cosp2/external': checked out '34d8eef3d231a87c0f73e565f6b5d548876b294a' Submodule path 'components/eam/src/physics/rrtmgp/external': checked out 'fdb714ea58e0fcbb23c81e0c6bf93840e5516c27' Submodule path 'components/elm/src/external_models/fates': checked out '5534a9405bbc5d9b825bf37bd0d65147bc0fda41' Submodule path 'components/elm/src/external_models/mpp': checked out 'c0c903e675e31e6b9ab447b0cc51ccd8a36fa7a7' Submodule path 'components/elm/src/external_models/sbetr': checked out 'f3636700b35441dbd30bf2921310a66f238d8e9e' Submodule path 'components/mpas-source': checked out 'bb1ea15299544e2b25144c06c621ff40fa482760' Submodule path 'externals/YAKL': checked out '7a5777e5d0afd3dae948462f2cb769043b06d073' Submodule path 'externals/cub': checked out 'c3cceac115c072fb63df1836ff46d8c60d9eb304' Submodule path 'externals/kokkos': checked out '8d62288677f9f7ed20d0e6a15009f0d9087e3170' Submodule path 'externals/scorpio': checked out '205e1e16d04aa2d449053af26204bc641d9feebf' Submodule path 'externals/scorpio_classic': checked out '154b0320ed99395ee7e790ed1122ca8bfac3bbc0' [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Modify Run Scripts) [Pipeline] sh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_BOMEX.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_RICO.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_ARM97.csh [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run BOMEX) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 1221289 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ echo '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2021.7.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/python3.9/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2022.3.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0 +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/latest/env ++++ dirname -- /opt/intel/oneapi/clck/latest +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/latest/env ++++ dirname -- /opt/intel/oneapi/intelpython/latest +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9 +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=21 ++ '[' 21 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''clck'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''intelpython'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=clck=latest ++ temp_array='advisor=latest ccl=latest clck=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=intelpython=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''clck=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''intelpython=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0/env +++++ dirname /opt/intel/oneapi/advisor/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0 ++++ echo /opt/intel/oneapi/advisor/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.6.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.6.0/env ++++ cd /opt/intel/oneapi/ccl/2021.6.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.6.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr clck=latest : '\(.*\)=.*' ++ arg_base=clck +++ expr clck=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/clck/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/clck/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ echo ':: clck -- latest' :: clck -- latest ++ . /opt/intel/oneapi/clck/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/clck/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/clck/latest/env/vars.sh +++ SCRIPT_NAME=vars.sh ++++ get_script_path /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script=/opt/intel/oneapi/clck/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/clck/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/clck/latest/env +++++ cd /opt/intel/oneapi/clck/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/clck/2021.6.0/env ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/env +++ SCRIPT_PATH=/opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env +++ CLCK_ROOT=/opt/intel/oneapi/clck/2021.6.0 +++ export CLCK_ROOT +++ dir=intel64 ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/bin/intel64 /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/bin/intel64 ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/lib/intel64 /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/include '' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/include ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/include +++ CPLUS_INCLUDE_PATH=/opt/intel/oneapi/clck/2021.6.0/include +++ export CPLUS_INCLUDE_PATH ++++ prepend_path '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' '' ++++ path_to_add='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ prepend_manpath /opt/intel/oneapi/clck/2021.6.0/man '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/man ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=3 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2022.1.0/env ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env +++ component_root=/opt/intel/oneapi/compiler/2022.1.0 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2022.1.0 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ icdadd libalteracl.so ++++ '[' -z '' ']' ++++ export OCL_ICD_FILENAMES=libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so ++++ icdadd libintelocl_emu.so ++++ '[' -z x ']' ++++ case ":$OCL_ICD_FILENAMES:" in ++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ export PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=4 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dal/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env +++ component_root=/opt/intel/oneapi/dal/2021.6.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2021.6.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++ temp_var=5 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2021.6.0/env ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2021.6.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/dep '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/dep ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/dep +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2021.6.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2021.6.0/documentation/man '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=6 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.6.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/bin /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/include /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=7 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ echo /opt/intel/oneapi/dnnl/2022.1.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2022.1.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++++ cd /opt/intel/oneapi/dnnl/2022.1.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 ++++ echo /opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=8 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/include /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=9 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2021.7.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.7.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/linux/include /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=10 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0/env +++++ dirname /opt/intel/oneapi/inspector/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0 ++++ echo /opt/intel/oneapi/inspector/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 +++ INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++ temp_var=11 ++ for arg in "$@" +++ expr intelpython=latest : '\(.*\)=.*' ++ arg_base=intelpython +++ expr intelpython=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ echo ':: intelpython -- latest' :: intelpython -- latest ++ . /opt/intel/oneapi/intelpython/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/intelpython/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/intelpython/latest/env +++++ cd /opt/intel/oneapi/intelpython/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/intelpython/python3.9/env ++++ printf %s /opt/intel/oneapi/intelpython/python3.9/env +++ SCRIPTPATH=/opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env +++ ROOTPATH=/opt/intel/oneapi/intelpython/python3.9 ++++ basename /opt/intel/oneapi/intelpython/python3.9 +++ VERSION=python3.9 ++++ dirname /opt/intel/oneapi/intelpython/python3.9 +++ PARENTDIR=/opt/intel/oneapi/intelpython ++++ basename /opt/intel/oneapi/intelpython +++ CURRENTENV=intelpython +++ MAINENV=intelpython +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.10 ']' +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.9 ']' +++ PYVER=python3.9 +++ POTENTIAL_ACTIVATE_PATH=/opt/intel/oneapi/intelpython/python3.9/../../intelpython/python3.9/bin/activate +++ '[' /opt/intel/oneapi/intelpython/latest/env/vars.sh = intelpython/latest/env/vars.sh ']' +++ export OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ '[' intelpython '!=' intelpython ']' +++ '[' -n 1 ']' +++ '[' -n '' ']' +++ BACKUP_SETVARS_CALL_PARAMETERS=SETVARS_CALL=1 +++ SANITIZED_SETVARS_CALL_PARAMETERS= +++ set -- '' ++++ env ++++ grep -q PS1 +++ '[' ']' +++ PS1_IS_SET=0 +++ BACKUP_PROMPT= +++ . /opt/intel/oneapi/intelpython/python3.9/bin/activate ++++ _CONDA_ROOT=/opt/intel/oneapi/intelpython/latest ++++ '[' -n '' ']' ++++ . /opt/intel/oneapi/intelpython/latest/etc/profile.d/conda.sh +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ '[' -z '' ']' +++++ export CONDA_SHLVL=0 +++++ CONDA_SHLVL=0 +++++ '[' -n '' ']' +++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ '[' -z '' ']' +++++ PS1= ++++ conda activate '' ++++ local cmd=activate ++++ case "$cmd" in ++++ __conda_activate activate '' ++++ '[' -n '' ']' ++++ local ask_conda +++++ PS1= +++++ __conda_exe shell.posix activate '' +++++ __add_sys_prefix_to_path +++++ '[' -n '' ']' ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda +++++ SYSP=/opt/intel/oneapi/intelpython/latest/bin ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ SYSP=/opt/intel/oneapi/intelpython/latest +++++ '[' -n '' ']' +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ /opt/intel/oneapi/intelpython/latest/bin/conda shell.posix activate '' ++++ ask_conda='PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' ++++ eval 'PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' +++++ PS1='(intelpython-python3.9) ' +++++ export PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ export CONDA_SHLVL=1 +++++ CONDA_SHLVL=1 +++++ export CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ export 'CONDA_PROMPT_MODIFIER=(intelpython-python3.9) ' +++++ CONDA_PROMPT_MODIFIER='(intelpython-python3.9) ' +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh ++++++ '[' 1 '!=' 1 ']' +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh ++++++ '[' libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so = '' ']' ++++ __conda_hashr ++++ '[' -n '' ']' ++++ '[' -n '' ']' ++++ hash -r +++ '[' 0 -eq 1 ']' +++ PS1= +++ unset BACKUP_PROMPT +++ set -- SETVARS_CALL=1 +++ unset BACKUP_SETVARS_CALL_PARAMETERS +++ unset SANITIZED_SETVARS_CALL_PARAMETERS +++ unset OVERWRITE_CONDA_DEFAULT_ENV +++ unset SCRIPTPATH +++ unset ROOTPATH +++ unset VERSION +++ unset CURRENTENV +++ unset PARENTDIR +++ unset MAINENV ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.6.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.6.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/include /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=14 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=15 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ']' ++++ printf %s '/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.6.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env +++ component_root=/opt/intel/oneapi/itac/2021.6.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.6.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.6.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.6.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/slib '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/bin /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.6.0/man '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=16 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/mkl/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2022.1.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2022.1.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2022.1.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2022.1.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=17 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.6.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.6.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.6.0/env ++++ cd /opt/intel/oneapi/mpi/2021.6.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.6.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.6.0//lib/mpi.jar:/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib/prov:/usr/lib64/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.6.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.6.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../include /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/.. /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/.. ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=19 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-bf3bf65b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1221289 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=20 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0/env +++++ dirname /opt/intel/oneapi/vtune/2022.3.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0 ++++ echo /opt/intel/oneapi/vtune/2022.3.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++ temp_var=21 ++ '[' 21 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_BOMEX.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: a24e4e5c38 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2022-10-14 09:45:01 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 09:45:01 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 09:45:01 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 09:45:01 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 09:45:01 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 09:45:01 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 09:45:01 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 09:45:01 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 09:45:01 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 09:45:01 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2022-10-14 09:45:03 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 09:45:04 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 09:45:04 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 09:45:04 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 09:45:04 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 09:45:04 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 09:45:04 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 09:45:04 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 09:45:04 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 09:45:04 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gptl.bldlog.221014-094503 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/mct.bldlog.221014-094503 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/pio.bldlog.221014-094503 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/csm_share.bldlog.221014-094503 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/kokkos.bldlog.221014-094503 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.221014-094503 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.221014-094503 Calling make, see top of log file for specific call Total build time: 543.406021 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2022-10-14 09:54:07 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 09:54:07 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 09:54:07 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 09:54:08 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 09:54:08 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 09:54:08 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 09:54:08 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 09:54:08 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 09:54:08 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 09:54:08 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2022-10-14 09:54:08 CASE.RUN BEGINS HERE 2022-10-14 09:54:08 RUN_MODEL BEGINS HERE 2022-10-14 09:54:08 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2022-10-14 09:54:08 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts 2022-10-14 09:54:08 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 09:54:08 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 09:54:08 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 09:54:08 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 09:54:08 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 09:54:08 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 09:54:08 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 09:54:08 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 09:54:08 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 09:54:08 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2022-10-14 09:54:09 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2022-10-14 09:54:09 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 2022-10-14 09:54:09 SAVE_PRERUN_PROVENANCE BEGINS HERE 2022-10-14 09:54:09 SAVE_PRERUN_PROVENANCE HAS FINISHED 2022-10-14 09:54:09 MODEL EXECUTION BEGINS HERE 2022-10-14 09:54:10 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.221014-095408 Submitted job case.run with id None BOMEX was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run DYCOMSrf01) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 1380862 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ echo '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2021.7.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/python3.9/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2022.3.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0 +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/latest/env ++++ dirname -- /opt/intel/oneapi/clck/latest +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/latest/env ++++ dirname -- /opt/intel/oneapi/intelpython/latest +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9 +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=21 ++ '[' 21 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''clck'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''intelpython'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=clck=latest ++ temp_array='advisor=latest ccl=latest clck=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=intelpython=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''clck=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''intelpython=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0/env +++++ dirname /opt/intel/oneapi/advisor/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0 ++++ echo /opt/intel/oneapi/advisor/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.6.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.6.0/env ++++ cd /opt/intel/oneapi/ccl/2021.6.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.6.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr clck=latest : '\(.*\)=.*' ++ arg_base=clck +++ expr clck=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/clck/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/clck/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ echo ':: clck -- latest' :: clck -- latest ++ . /opt/intel/oneapi/clck/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/clck/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/clck/latest/env/vars.sh +++ SCRIPT_NAME=vars.sh ++++ get_script_path /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script=/opt/intel/oneapi/clck/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/clck/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/clck/latest/env +++++ cd /opt/intel/oneapi/clck/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/clck/2021.6.0/env ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/env +++ SCRIPT_PATH=/opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env +++ CLCK_ROOT=/opt/intel/oneapi/clck/2021.6.0 +++ export CLCK_ROOT +++ dir=intel64 ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/bin/intel64 /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/bin/intel64 ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/lib/intel64 /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/include '' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/include ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/include +++ CPLUS_INCLUDE_PATH=/opt/intel/oneapi/clck/2021.6.0/include +++ export CPLUS_INCLUDE_PATH ++++ prepend_path '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' '' ++++ path_to_add='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ prepend_manpath /opt/intel/oneapi/clck/2021.6.0/man '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/man ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=3 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2022.1.0/env ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env +++ component_root=/opt/intel/oneapi/compiler/2022.1.0 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2022.1.0 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ icdadd libalteracl.so ++++ '[' -z '' ']' ++++ export OCL_ICD_FILENAMES=libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so ++++ icdadd libintelocl_emu.so ++++ '[' -z x ']' ++++ case ":$OCL_ICD_FILENAMES:" in ++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ export PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=4 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dal/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env +++ component_root=/opt/intel/oneapi/dal/2021.6.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2021.6.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++ temp_var=5 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2021.6.0/env ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2021.6.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/dep '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/dep ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/dep +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2021.6.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2021.6.0/documentation/man '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=6 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.6.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/bin /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/include /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=7 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ echo /opt/intel/oneapi/dnnl/2022.1.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2022.1.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++++ cd /opt/intel/oneapi/dnnl/2022.1.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 ++++ echo /opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=8 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/include /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=9 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2021.7.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.7.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/linux/include /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=10 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0/env +++++ dirname /opt/intel/oneapi/inspector/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0 ++++ echo /opt/intel/oneapi/inspector/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 +++ INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++ temp_var=11 ++ for arg in "$@" +++ expr intelpython=latest : '\(.*\)=.*' ++ arg_base=intelpython +++ expr intelpython=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ echo ':: intelpython -- latest' :: intelpython -- latest ++ . /opt/intel/oneapi/intelpython/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/intelpython/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/intelpython/latest/env +++++ cd /opt/intel/oneapi/intelpython/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/intelpython/python3.9/env ++++ printf %s /opt/intel/oneapi/intelpython/python3.9/env +++ SCRIPTPATH=/opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env +++ ROOTPATH=/opt/intel/oneapi/intelpython/python3.9 ++++ basename /opt/intel/oneapi/intelpython/python3.9 +++ VERSION=python3.9 ++++ dirname /opt/intel/oneapi/intelpython/python3.9 +++ PARENTDIR=/opt/intel/oneapi/intelpython ++++ basename /opt/intel/oneapi/intelpython +++ CURRENTENV=intelpython +++ MAINENV=intelpython +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.10 ']' +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.9 ']' +++ PYVER=python3.9 +++ POTENTIAL_ACTIVATE_PATH=/opt/intel/oneapi/intelpython/python3.9/../../intelpython/python3.9/bin/activate +++ '[' /opt/intel/oneapi/intelpython/latest/env/vars.sh = intelpython/latest/env/vars.sh ']' +++ export OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ '[' intelpython '!=' intelpython ']' +++ '[' -n 1 ']' +++ '[' -n '' ']' +++ BACKUP_SETVARS_CALL_PARAMETERS=SETVARS_CALL=1 +++ SANITIZED_SETVARS_CALL_PARAMETERS= +++ set -- '' ++++ env ++++ grep -q PS1 +++ '[' ']' +++ PS1_IS_SET=0 +++ BACKUP_PROMPT= +++ . /opt/intel/oneapi/intelpython/python3.9/bin/activate ++++ _CONDA_ROOT=/opt/intel/oneapi/intelpython/latest ++++ '[' -n '' ']' ++++ . /opt/intel/oneapi/intelpython/latest/etc/profile.d/conda.sh +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ '[' -z '' ']' +++++ export CONDA_SHLVL=0 +++++ CONDA_SHLVL=0 +++++ '[' -n '' ']' +++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ '[' -z '' ']' +++++ PS1= ++++ conda activate '' ++++ local cmd=activate ++++ case "$cmd" in ++++ __conda_activate activate '' ++++ '[' -n '' ']' ++++ local ask_conda +++++ PS1= +++++ __conda_exe shell.posix activate '' +++++ __add_sys_prefix_to_path +++++ '[' -n '' ']' ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda +++++ SYSP=/opt/intel/oneapi/intelpython/latest/bin ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ SYSP=/opt/intel/oneapi/intelpython/latest +++++ '[' -n '' ']' +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ /opt/intel/oneapi/intelpython/latest/bin/conda shell.posix activate '' ++++ ask_conda='PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' ++++ eval 'PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' +++++ PS1='(intelpython-python3.9) ' +++++ export PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ export CONDA_SHLVL=1 +++++ CONDA_SHLVL=1 +++++ export CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ export 'CONDA_PROMPT_MODIFIER=(intelpython-python3.9) ' +++++ CONDA_PROMPT_MODIFIER='(intelpython-python3.9) ' +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh ++++++ '[' 1 '!=' 1 ']' +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh ++++++ '[' libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so = '' ']' ++++ __conda_hashr ++++ '[' -n '' ']' ++++ '[' -n '' ']' ++++ hash -r +++ '[' 0 -eq 1 ']' +++ PS1= +++ unset BACKUP_PROMPT +++ set -- SETVARS_CALL=1 +++ unset BACKUP_SETVARS_CALL_PARAMETERS +++ unset SANITIZED_SETVARS_CALL_PARAMETERS +++ unset OVERWRITE_CONDA_DEFAULT_ENV +++ unset SCRIPTPATH +++ unset ROOTPATH +++ unset VERSION +++ unset CURRENTENV +++ unset PARENTDIR +++ unset MAINENV ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.6.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.6.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/include /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=14 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=15 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ']' ++++ printf %s '/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.6.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env +++ component_root=/opt/intel/oneapi/itac/2021.6.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.6.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.6.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.6.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/slib '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/bin /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.6.0/man '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=16 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/mkl/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2022.1.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2022.1.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2022.1.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2022.1.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=17 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.6.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.6.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.6.0/env ++++ cd /opt/intel/oneapi/mpi/2021.6.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.6.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.6.0//lib/mpi.jar:/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib/prov:/usr/lib64/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.6.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.6.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../include /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/.. /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/.. ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=19 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-5de7c1a9/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1380862 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=20 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0/env +++++ dirname /opt/intel/oneapi/vtune/2022.3.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0 ++++ echo /opt/intel/oneapi/vtune/2022.3.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++ temp_var=21 ++ '[' 21 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: a24e4e5c38 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2022-10-14 09:54:16 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 09:54:16 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 09:54:16 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 09:54:17 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 09:54:17 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 09:54:17 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 09:54:17 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 09:54:17 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 09:54:17 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 09:54:17 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2022-10-14 09:54:18 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 09:54:19 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 09:54:19 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 09:54:19 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 09:54:19 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 09:54:19 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 09:54:19 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 09:54:19 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 09:54:19 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 09:54:19 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gptl.bldlog.221014-095418 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/mct.bldlog.221014-095418 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/pio.bldlog.221014-095418 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/csm_share.bldlog.221014-095418 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/kokkos.bldlog.221014-095418 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.221014-095418 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.221014-095418 Calling make, see top of log file for specific call Total build time: 530.240190 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2022-10-14 10:03:09 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:03:09 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:03:09 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:03:09 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:03:09 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:03:09 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:03:09 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:03:09 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:03:10 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:03:10 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2022-10-14 10:03:10 CASE.RUN BEGINS HERE 2022-10-14 10:03:10 RUN_MODEL BEGINS HERE 2022-10-14 10:03:10 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2022-10-14 10:03:10 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts 2022-10-14 10:03:10 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:03:10 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:03:10 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:03:10 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:03:10 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:03:10 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:03:10 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:03:10 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:03:10 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:03:10 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2022-10-14 10:03:11 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2022-10-14 10:03:11 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 2022-10-14 10:03:11 SAVE_PRERUN_PROVENANCE BEGINS HERE 2022-10-14 10:03:11 SAVE_PRERUN_PROVENANCE HAS FINISHED 2022-10-14 10:03:11 MODEL EXECUTION BEGINS HERE 2022-10-14 10:03:12 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run/e3sm.log.221014-100310 Submitted job case.run with id None DYCOMSrf01 was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run RICO) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 1495992 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ echo '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2021.7.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/python3.9/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2022.3.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0 +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/latest/env ++++ dirname -- /opt/intel/oneapi/clck/latest +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/latest/env ++++ dirname -- /opt/intel/oneapi/intelpython/latest +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9 +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l +++ printf '%s\n' 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' ++ temp_var=21 ++ '[' 21 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''clck'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''intelpython'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=clck=latest ++ temp_array='advisor=latest ccl=latest clck=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=intelpython=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''clck=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''intelpython=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0/env +++++ dirname /opt/intel/oneapi/advisor/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0 ++++ echo /opt/intel/oneapi/advisor/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.6.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.6.0/env ++++ cd /opt/intel/oneapi/ccl/2021.6.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.6.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr clck=latest : '\(.*\)=.*' ++ arg_base=clck +++ expr clck=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/clck/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/clck/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ echo ':: clck -- latest' :: clck -- latest ++ . /opt/intel/oneapi/clck/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/clck/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/clck/latest/env/vars.sh +++ SCRIPT_NAME=vars.sh ++++ get_script_path /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script=/opt/intel/oneapi/clck/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/clck/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/clck/latest/env +++++ cd /opt/intel/oneapi/clck/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/clck/2021.6.0/env ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/env +++ SCRIPT_PATH=/opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env +++ CLCK_ROOT=/opt/intel/oneapi/clck/2021.6.0 +++ export CLCK_ROOT +++ dir=intel64 ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/bin/intel64 /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/bin/intel64 ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/lib/intel64 /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/include '' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/include ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/include +++ CPLUS_INCLUDE_PATH=/opt/intel/oneapi/clck/2021.6.0/include +++ export CPLUS_INCLUDE_PATH ++++ prepend_path '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' '' ++++ path_to_add='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ prepend_manpath /opt/intel/oneapi/clck/2021.6.0/man '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/man ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=3 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2022.1.0/env ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env +++ component_root=/opt/intel/oneapi/compiler/2022.1.0 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2022.1.0 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ icdadd libalteracl.so ++++ '[' -z '' ']' ++++ export OCL_ICD_FILENAMES=libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so ++++ icdadd libintelocl_emu.so ++++ '[' -z x ']' ++++ case ":$OCL_ICD_FILENAMES:" in ++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ export PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=4 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dal/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env +++ component_root=/opt/intel/oneapi/dal/2021.6.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2021.6.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++ temp_var=5 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2021.6.0/env ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2021.6.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/dep '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/dep ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/dep +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2021.6.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2021.6.0/documentation/man '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=6 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.6.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/bin /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/include /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=7 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ echo /opt/intel/oneapi/dnnl/2022.1.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2022.1.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++++ cd /opt/intel/oneapi/dnnl/2022.1.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 ++++ echo /opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=8 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/include /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=9 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2021.7.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.7.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/linux/include /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=10 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0/env +++++ dirname /opt/intel/oneapi/inspector/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0 ++++ echo /opt/intel/oneapi/inspector/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 +++ INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++ temp_var=11 ++ for arg in "$@" +++ expr intelpython=latest : '\(.*\)=.*' ++ arg_base=intelpython +++ expr intelpython=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ echo ':: intelpython -- latest' :: intelpython -- latest ++ . /opt/intel/oneapi/intelpython/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/intelpython/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/intelpython/latest/env +++++ cd /opt/intel/oneapi/intelpython/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/intelpython/python3.9/env ++++ printf %s /opt/intel/oneapi/intelpython/python3.9/env +++ SCRIPTPATH=/opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env +++ ROOTPATH=/opt/intel/oneapi/intelpython/python3.9 ++++ basename /opt/intel/oneapi/intelpython/python3.9 +++ VERSION=python3.9 ++++ dirname /opt/intel/oneapi/intelpython/python3.9 +++ PARENTDIR=/opt/intel/oneapi/intelpython ++++ basename /opt/intel/oneapi/intelpython +++ CURRENTENV=intelpython +++ MAINENV=intelpython +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.10 ']' +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.9 ']' +++ PYVER=python3.9 +++ POTENTIAL_ACTIVATE_PATH=/opt/intel/oneapi/intelpython/python3.9/../../intelpython/python3.9/bin/activate +++ '[' /opt/intel/oneapi/intelpython/latest/env/vars.sh = intelpython/latest/env/vars.sh ']' +++ export OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ '[' intelpython '!=' intelpython ']' +++ '[' -n 1 ']' +++ '[' -n '' ']' +++ BACKUP_SETVARS_CALL_PARAMETERS=SETVARS_CALL=1 +++ SANITIZED_SETVARS_CALL_PARAMETERS= +++ set -- '' ++++ env ++++ grep -q PS1 +++ '[' ']' +++ PS1_IS_SET=0 +++ BACKUP_PROMPT= +++ . /opt/intel/oneapi/intelpython/python3.9/bin/activate ++++ _CONDA_ROOT=/opt/intel/oneapi/intelpython/latest ++++ '[' -n '' ']' ++++ . /opt/intel/oneapi/intelpython/latest/etc/profile.d/conda.sh +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ '[' -z '' ']' +++++ export CONDA_SHLVL=0 +++++ CONDA_SHLVL=0 +++++ '[' -n '' ']' +++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ '[' -z '' ']' +++++ PS1= ++++ conda activate '' ++++ local cmd=activate ++++ case "$cmd" in ++++ __conda_activate activate '' ++++ '[' -n '' ']' ++++ local ask_conda +++++ PS1= +++++ __conda_exe shell.posix activate '' +++++ __add_sys_prefix_to_path +++++ '[' -n '' ']' ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda +++++ SYSP=/opt/intel/oneapi/intelpython/latest/bin ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ SYSP=/opt/intel/oneapi/intelpython/latest +++++ '[' -n '' ']' +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ /opt/intel/oneapi/intelpython/latest/bin/conda shell.posix activate '' ++++ ask_conda='PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' ++++ eval 'PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' +++++ PS1='(intelpython-python3.9) ' +++++ export PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ export CONDA_SHLVL=1 +++++ CONDA_SHLVL=1 +++++ export CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ export 'CONDA_PROMPT_MODIFIER=(intelpython-python3.9) ' +++++ CONDA_PROMPT_MODIFIER='(intelpython-python3.9) ' +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh ++++++ '[' 1 '!=' 1 ']' +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh ++++++ '[' libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so = '' ']' ++++ __conda_hashr ++++ '[' -n '' ']' ++++ '[' -n '' ']' ++++ hash -r +++ '[' 0 -eq 1 ']' +++ PS1= +++ unset BACKUP_PROMPT +++ set -- SETVARS_CALL=1 +++ unset BACKUP_SETVARS_CALL_PARAMETERS +++ unset SANITIZED_SETVARS_CALL_PARAMETERS +++ unset OVERWRITE_CONDA_DEFAULT_ENV +++ unset SCRIPTPATH +++ unset ROOTPATH +++ unset VERSION +++ unset CURRENTENV +++ unset PARENTDIR +++ unset MAINENV ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.6.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.6.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/include /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=14 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=15 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ']' ++++ printf %s '/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.6.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env +++ component_root=/opt/intel/oneapi/itac/2021.6.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.6.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.6.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.6.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/slib '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/bin /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.6.0/man '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=16 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/mkl/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2022.1.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2022.1.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2022.1.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2022.1.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=17 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.6.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.6.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.6.0/env ++++ cd /opt/intel/oneapi/mpi/2021.6.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.6.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.6.0//lib/mpi.jar:/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib/prov:/usr/lib64/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.6.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.6.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../include /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/.. /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/.. ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=19 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-083294e3/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1495992 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=20 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0/env +++++ dirname /opt/intel/oneapi/vtune/2022.3.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0 ++++ echo /opt/intel/oneapi/vtune/2022.3.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++ temp_var=21 ++ '[' 21 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_RICO.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: a24e4e5c38 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2022-10-14 10:03:30 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:03:30 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:03:30 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:03:30 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:03:30 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:03:30 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:03:30 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:03:30 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:03:30 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:03:30 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2022-10-14 10:03:33 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:03:33 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:03:33 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:03:33 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:03:33 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:03:33 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:03:33 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:03:33 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:03:33 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:03:33 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gptl.bldlog.221014-100333 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/mct.bldlog.221014-100333 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/pio.bldlog.221014-100333 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/csm_share.bldlog.221014-100333 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/kokkos.bldlog.221014-100333 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.221014-100333 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.221014-100333 Calling make, see top of log file for specific call Total build time: 529.154433 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2022-10-14 10:12:22 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:12:22 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:12:23 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:12:23 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:12:23 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:12:23 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:12:23 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:12:23 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:12:23 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:12:23 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2022-10-14 10:12:23 CASE.RUN BEGINS HERE 2022-10-14 10:12:23 RUN_MODEL BEGINS HERE 2022-10-14 10:12:23 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2022-10-14 10:12:23 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts 2022-10-14 10:12:23 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:12:23 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:12:23 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:12:24 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:12:24 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:12:24 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:12:24 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:12:24 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:12:24 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:12:24 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2022-10-14 10:12:24 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2022-10-14 10:12:24 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 2022-10-14 10:12:24 SAVE_PRERUN_PROVENANCE BEGINS HERE 2022-10-14 10:12:24 SAVE_PRERUN_PROVENANCE HAS FINISHED 2022-10-14 10:12:24 MODEL EXECUTION BEGINS HERE 2022-10-14 10:12:25 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/run/e3sm.log.221014-101223 Submitted job case.run with id None RICO was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run ARM97) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ printf '%s\n' --force +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 1611799 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ echo '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2021.7.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/python3.9/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2022.3.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0 +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/latest/env ++++ dirname -- /opt/intel/oneapi/clck/latest +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/latest/env ++++ dirname -- /opt/intel/oneapi/intelpython/latest +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9 +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=21 ++ '[' 21 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''clck'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''intelpython'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=clck=latest ++ temp_array='advisor=latest ccl=latest clck=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=intelpython=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''clck=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''intelpython=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0/env +++++ dirname /opt/intel/oneapi/advisor/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0 ++++ echo /opt/intel/oneapi/advisor/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.6.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.6.0/env ++++ cd /opt/intel/oneapi/ccl/2021.6.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.6.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr clck=latest : '\(.*\)=.*' ++ arg_base=clck +++ expr clck=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/clck/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/clck/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ echo ':: clck -- latest' :: clck -- latest ++ . /opt/intel/oneapi/clck/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/clck/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/clck/latest/env/vars.sh +++ SCRIPT_NAME=vars.sh ++++ get_script_path /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script=/opt/intel/oneapi/clck/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/clck/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/clck/latest/env +++++ cd /opt/intel/oneapi/clck/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/clck/2021.6.0/env ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/env +++ SCRIPT_PATH=/opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env +++ CLCK_ROOT=/opt/intel/oneapi/clck/2021.6.0 +++ export CLCK_ROOT +++ dir=intel64 ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/bin/intel64 /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/bin/intel64 ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/lib/intel64 /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/include '' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/include ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/include +++ CPLUS_INCLUDE_PATH=/opt/intel/oneapi/clck/2021.6.0/include +++ export CPLUS_INCLUDE_PATH ++++ prepend_path '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' '' ++++ path_to_add='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ prepend_manpath /opt/intel/oneapi/clck/2021.6.0/man '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/man ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=3 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2022.1.0/env ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env +++ component_root=/opt/intel/oneapi/compiler/2022.1.0 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2022.1.0 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ icdadd libalteracl.so ++++ '[' -z '' ']' ++++ export OCL_ICD_FILENAMES=libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so ++++ icdadd libintelocl_emu.so ++++ '[' -z x ']' ++++ case ":$OCL_ICD_FILENAMES:" in ++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ export PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=4 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dal/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env +++ component_root=/opt/intel/oneapi/dal/2021.6.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2021.6.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++ temp_var=5 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2021.6.0/env ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2021.6.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/dep '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/dep ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/dep +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2021.6.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2021.6.0/documentation/man '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=6 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.6.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/bin /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/include /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=7 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ echo /opt/intel/oneapi/dnnl/2022.1.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2022.1.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++++ cd /opt/intel/oneapi/dnnl/2022.1.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 ++++ echo /opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=8 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/include /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=9 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2021.7.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.7.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/linux/include /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=10 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0/env +++++ dirname /opt/intel/oneapi/inspector/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0 ++++ echo /opt/intel/oneapi/inspector/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 +++ INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++ temp_var=11 ++ for arg in "$@" +++ expr intelpython=latest : '\(.*\)=.*' ++ arg_base=intelpython +++ expr intelpython=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ echo ':: intelpython -- latest' :: intelpython -- latest ++ . /opt/intel/oneapi/intelpython/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/intelpython/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/intelpython/latest/env +++++ cd /opt/intel/oneapi/intelpython/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/intelpython/python3.9/env ++++ printf %s /opt/intel/oneapi/intelpython/python3.9/env +++ SCRIPTPATH=/opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env +++ ROOTPATH=/opt/intel/oneapi/intelpython/python3.9 ++++ basename /opt/intel/oneapi/intelpython/python3.9 +++ VERSION=python3.9 ++++ dirname /opt/intel/oneapi/intelpython/python3.9 +++ PARENTDIR=/opt/intel/oneapi/intelpython ++++ basename /opt/intel/oneapi/intelpython +++ CURRENTENV=intelpython +++ MAINENV=intelpython +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.10 ']' +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.9 ']' +++ PYVER=python3.9 +++ POTENTIAL_ACTIVATE_PATH=/opt/intel/oneapi/intelpython/python3.9/../../intelpython/python3.9/bin/activate +++ '[' /opt/intel/oneapi/intelpython/latest/env/vars.sh = intelpython/latest/env/vars.sh ']' +++ export OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ '[' intelpython '!=' intelpython ']' +++ '[' -n 1 ']' +++ '[' -n '' ']' +++ BACKUP_SETVARS_CALL_PARAMETERS=SETVARS_CALL=1 +++ SANITIZED_SETVARS_CALL_PARAMETERS= +++ set -- '' ++++ grep -q PS1 ++++ env +++ '[' ']' +++ PS1_IS_SET=0 +++ BACKUP_PROMPT= +++ . /opt/intel/oneapi/intelpython/python3.9/bin/activate ++++ _CONDA_ROOT=/opt/intel/oneapi/intelpython/latest ++++ '[' -n '' ']' ++++ . /opt/intel/oneapi/intelpython/latest/etc/profile.d/conda.sh +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ '[' -z '' ']' +++++ export CONDA_SHLVL=0 +++++ CONDA_SHLVL=0 +++++ '[' -n '' ']' +++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ '[' -z '' ']' +++++ PS1= ++++ conda activate '' ++++ local cmd=activate ++++ case "$cmd" in ++++ __conda_activate activate '' ++++ '[' -n '' ']' ++++ local ask_conda +++++ PS1= +++++ __conda_exe shell.posix activate '' +++++ __add_sys_prefix_to_path +++++ '[' -n '' ']' ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda +++++ SYSP=/opt/intel/oneapi/intelpython/latest/bin ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ SYSP=/opt/intel/oneapi/intelpython/latest +++++ '[' -n '' ']' +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ /opt/intel/oneapi/intelpython/latest/bin/conda shell.posix activate '' ++++ ask_conda='PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' ++++ eval 'PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' +++++ PS1='(intelpython-python3.9) ' +++++ export PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ export CONDA_SHLVL=1 +++++ CONDA_SHLVL=1 +++++ export CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ export 'CONDA_PROMPT_MODIFIER=(intelpython-python3.9) ' +++++ CONDA_PROMPT_MODIFIER='(intelpython-python3.9) ' +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh ++++++ '[' 1 '!=' 1 ']' +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh ++++++ '[' libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so = '' ']' ++++ __conda_hashr ++++ '[' -n '' ']' ++++ '[' -n '' ']' ++++ hash -r +++ '[' 0 -eq 1 ']' +++ PS1= +++ unset BACKUP_PROMPT +++ set -- SETVARS_CALL=1 +++ unset BACKUP_SETVARS_CALL_PARAMETERS +++ unset SANITIZED_SETVARS_CALL_PARAMETERS +++ unset OVERWRITE_CONDA_DEFAULT_ENV +++ unset SCRIPTPATH +++ unset ROOTPATH +++ unset VERSION +++ unset CURRENTENV +++ unset PARENTDIR +++ unset MAINENV ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.6.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.6.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/include /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=14 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=15 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ']' ++++ printf %s '/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.6.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env +++ component_root=/opt/intel/oneapi/itac/2021.6.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.6.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.6.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.6.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/slib '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/bin /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.6.0/man '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=16 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/mkl/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2022.1.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2022.1.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2022.1.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2022.1.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=17 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.6.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.6.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.6.0/env ++++ cd /opt/intel/oneapi/mpi/2021.6.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.6.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.6.0//lib/mpi.jar:/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib/prov:/usr/lib64/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.6.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.6.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../include /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/.. /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/.. ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=19 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-25152ae5/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 1611799 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=20 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0/env +++++ dirname /opt/intel/oneapi/vtune/2022.3.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0 ++++ echo /opt/intel/oneapi/vtune/2022.3.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++ temp_var=21 ++ '[' 21 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_ARM97.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: a24e4e5c38 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2022-10-14 10:12:37 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:12:37 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:12:37 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:12:38 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:12:38 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:12:38 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:12:38 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:12:38 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:12:38 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:12:38 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2022-10-14 10:12:40 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:12:40 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:12:41 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:12:41 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:12:41 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:12:41 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:12:41 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:12:41 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:12:41 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:12:41 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/gptl.bldlog.221014-101240 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/mct.bldlog.221014-101240 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/pio.bldlog.221014-101240 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/csm_share.bldlog.221014-101240 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/kokkos.bldlog.221014-101240 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.bldlog.221014-101240 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.bldlog.221014-101240 Calling make, see top of log file for specific call Total build time: 514.053307 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2022-10-14 10:21:14 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:21:15 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:21:15 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:21:15 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:21:15 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:21:15 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:21:15 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:21:15 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:21:15 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:21:15 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2022-10-14 10:21:15 CASE.RUN BEGINS HERE 2022-10-14 10:21:15 RUN_MODEL BEGINS HERE 2022-10-14 10:21:15 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2022-10-14 10:21:15 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts 2022-10-14 10:21:15 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2022-10-14 10:21:16 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2022-10-14 10:21:16 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2022-10-14 10:21:16 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2022-10-14 10:21:16 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2022-10-14 10:21:16 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2022-10-14 10:21:16 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2022-10-14 10:21:16 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2022-10-14 10:21:16 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2022-10-14 10:21:16 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2022-10-14 10:21:16 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2022-10-14 10:21:16 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.exe >> e3sm.log.$LID 2>&1 2022-10-14 10:21:16 SAVE_PRERUN_PROVENANCE BEGINS HERE 2022-10-14 10:21:16 SAVE_PRERUN_PROVENANCE HAS FINISHED 2022-10-14 10:21:16 MODEL EXECUTION BEGINS HERE 2022-10-14 10:21:18 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/run/e3sm.log.221014-102115 Submitted job case.run with id None ARM97 was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + gzip -d projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.221014-094503.gz + cat projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.221014-094503 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts" -DCASETOOLS="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build" -DINCROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lib/include" -DLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys default -scam -nlev 72 -clubb_sgs -nadv 29 -rad rrtmg -chem trop_mam3 -silent -nlev 72 -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld real 1.20 user 0.81 sys 0.38 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/CMakeFiles /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' Scanning dependencies of target ocn make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build [ 0%] Generating buffer.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/buffer.F90 [ 0%] Generating restUtilMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/restUtilMod.F90 [ 0%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o [ 0%] Generating physics_buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/physics_buffer.F90 Scanning dependencies of target ice [ 0%] Generating ncdio_pio.F90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/ncdio_pio.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 0%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o [ 0%] Generating subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/subcol_utils.F90 [ 0%] Generating dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= [ 0%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 [ 0%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.138568 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.200713 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.216818 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o Scanning dependencies of target atm make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.195056 seconds make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.154638 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.134938 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.647233 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90:25:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o built in 0.224595 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o [ 2%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/landunit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.275500 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o built in 0.144605 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_fileunits.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o built in 0.240718 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o built in 0.283090 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/ocn_comp_mct.mod cmake/ocn/CMakeFiles/ocn.dir/ocn_comp_mct.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o built in 0.277460 seconds [ 2%] Linking CXX static library libocn.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && /usr/bin/cmake -P CMakeFiles/ocn.dir/cmake_clean_target.cmake [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffixed-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/mpishorthand.F -o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o built in 0.178767 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && /usr/bin/cmake -E cmake_link_script CMakeFiles/ocn.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libocn.a CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o Target libocn.a built in 0.005218 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libocn.a Target libocn.a built in 0.004857 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 2%] Built target ocn make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof/CMakeFiles/rof.dir/DependInfo.cmake --color= Scanning dependencies of target rof make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o built in 0.228835 seconds [ 2%] Building Fortran object cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/rof/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.srof -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90 -o CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o built in 0.143891 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o.provides.build [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_communicate.mod cmake/ice/CMakeFiles/ice.dir/ice_communicate.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_constants.mod cmake/ice/CMakeFiles/ice.dir/ice_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain_size.mod cmake/ice/CMakeFiles/ice.dir/ice_domain_size.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fileunits.mod cmake/ice/CMakeFiles/ice.dir/ice_fileunits.mod.stamp GNU [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_broadcast.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o built in 0.288645 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/namelist_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o Target CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o built in 0.195230 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/rof/rof_comp_mct.mod cmake/rof/CMakeFiles/rof.dir/rof_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library librof.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof && /usr/bin/cmake -P CMakeFiles/rof.dir/cmake_clean_target.cmake Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o built in 0.213867 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof && /usr/bin/cmake -E cmake_link_script CMakeFiles/rof.dir/link.txt --verbose=1 [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc librof.a CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o Target librof.a built in 0.004129 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib librof.a Target librof.a built in 0.004326 seconds /usr/bin/cmake -E touch cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 2%] Built target rof [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o built in 0.285655 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o built in 0.387539 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_scam.mod cmake/ice/CMakeFiles/ice.dir/ice_scam.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o built in 0.237352 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SpeciesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o built in 0.220988 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o.provides.build [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varsur.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.273286 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/infnan.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.236333 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.259977 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o.provides.build [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_instance.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o.provides.build [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_exit.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o built in 0.225373 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o built in 0.168909 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o built in 0.286554 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_broadcast.mod cmake/ice/CMakeFiles/ice.dir/ice_broadcast.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_atmo.mod cmake/ice/CMakeFiles/ice.dir/ice_atmo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o built in 0.313235 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_calendar.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o built in 0.212264 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_blocks.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.219018 seconds Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.300910 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNBeTRIndicatorMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o built in 0.255723 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.284099 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.245315 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o built in 0.238446 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/string_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.300577 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.242551 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/params_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.239914 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.534983 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.317569 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_spacecurve.mod cmake/ice/CMakeFiles/ice.dir/ice_spacecurve.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o.provides.build [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/ll_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o.provides.build [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability_tools.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.273025 seconds [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o built in 0.245055 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.168737 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o.provides.build [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o built in 0.325386 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o built in 0.159058 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.219066 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sort_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.310700 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.293549 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_varorb.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.279412 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o built in 0.230429 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.229503 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.276390 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o built in 0.283670 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/chem_mods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.220818 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o built in 0.217381 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o built in 0.291744 seconds [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.329788 seconds [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/cam_cpl_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o built in 1.183818 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_distribution.mod cmake/ice/CMakeFiles/ice.dir/ice_distribution.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o built in 0.231086 seconds [ 8%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o built in 0.224472 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/srf_field_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90:32:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.232819 seconds Target CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o built in 0.354329 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o built in 0.280820 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.543675 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_global_reductions.mod cmake/ice/CMakeFiles/ice.dir/ice_global_reductions.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.221830 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.231944 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o [ 9%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90:61:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.322261 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.234897 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/error_function.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o built in 0.281595 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o built in 0.232553 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_methods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.232964 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.340559 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.353717 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.229005 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.235767 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o built in 0.302639 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o built in 0.317640 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.243471 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.228194 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.221093 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.300391 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.236863 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/m_sad_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.277126 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.247687 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.228832 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.291501 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.304564 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.225757 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.228557 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 2.648182 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o built in 0.305900 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.223274 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.227184 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.437930 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.241533 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.294058 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_gather_scatter.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.213380 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o built in 0.289381 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.396500 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o built in 0.237886 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.249602 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.279789 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.273515 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.222036 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.803653 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.232727 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.190410 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o built in 0.277811 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o.provides.build [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.335554 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.228426 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o built in 0.264173 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.252946 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.271041 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.215865 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.173531 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.275695 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o built in 0.220929 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.226154 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.607364 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_pio.mod cmake/ice/CMakeFiles/ice.dir/ice_pio.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.272071 seconds [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.218069 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o built in 0.276486 seconds [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.221966 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o built in 0.280216 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.333513 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.226667 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o built in 0.588352 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.284599 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_read_write.mod cmake/ice/CMakeFiles/ice.dir/ice_read_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.263814 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.205040 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.282645 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.222927 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.443513 seconds make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= Scanning dependencies of target glc make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 18%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.264125 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.226365 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.685668 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.177269 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o [ 18%] Linking CXX static library libglc.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target libglc.a built in 0.005632 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a Target libglc.a built in 0.004060 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.214219 seconds /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o [ 18%] Built target glc /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.284881 seconds Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 18%] Building Fortran object cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/wav/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.329385 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.231387 seconds Target CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o built in 0.175667 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/wav/wav_comp_mct.mod cmake/wav/CMakeFiles/wav.dir/wav_comp_mct.mod.stamp GNU [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o [ 19%] Linking CXX static library libwav.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav && /usr/bin/cmake -P CMakeFiles/wav.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav && /usr/bin/cmake -E cmake_link_script CMakeFiles/wav.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libwav.a CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.285917 seconds Target libwav.a built in 0.004215 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libwav.a [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o Target libwav.a built in 0.004114 seconds /usr/bin/cmake -E touch cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 19%] Built target wav [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.223468 seconds [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.280027 seconds [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.282601 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.232183 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.235294 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.282023 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.288310 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o built in 0.918504 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_grid.mod cmake/ice/CMakeFiles/ice.dir/ice_grid.mod.stamp GNU [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.225431 seconds [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.232065 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.282109 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.206511 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.237341 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.281325 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.290894 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.234499 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.886021 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.235134 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.285131 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o built in 0.288687 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.212144 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.240927 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.264785 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.221554 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.263517 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.234376 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.218910 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.275244 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.278305 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.226239 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.207885 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.220613 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o built in 0.264761 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.327420 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.633830 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_ocean.mod cmake/ice/CMakeFiles/ice.dir/ice_ocean.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_remap.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_remap.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o built in 0.224121 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varctl.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o built in 0.231217 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/landunit_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesconstantsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesconstantsmod.mod.stamp GNU [ 23%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU [ 23%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.269962 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/error_code.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.212072 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_kind_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_kind_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/speciesmod.mod cmake/lnd/CMakeFiles/lnd.dir/speciesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varsur.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varsur.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o built in 0.284866 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/model_flags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.520255 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o built in 0.325173 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.350446 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvemod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvemod.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.265312 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_nlutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_nlutilsmod.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_names.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o built in 0.267882 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnbetrindicatormod.mod cmake/lnd/CMakeFiles/lnd.dir/cnbetrindicatormod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_decompmod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o built in 1.040611 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o built in 0.285017 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o built in 0.329777 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mt95.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.231694 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pbl_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.235446 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o built in 0.303201 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.241419 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/trb_mtn_stress.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.661411 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o built in 0.808740 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restart.mod cmake/ice/CMakeFiles/ice.dir/ice_restart.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_prescribed_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_prescribed_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_driver.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_driver.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.240642 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_pftvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_pftvarcontype.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.131567 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o built in 0.300039 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o built in 0.333914 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o built in 0.240668 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o built in 0.410894 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vdiff_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/topounit_varcon.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varorb.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varorb.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelconstants.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelconstants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_constants.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_aerosol.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_constants.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o built in 0.294434 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_constants.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_filter_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_filter_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_landunit_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_bounds.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_bounds.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varctl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varpar.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/elm_cpl_indices.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o built in 0.260186 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o built in 0.409050 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_finalizeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o built in 0.540861 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_age.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o built in 0.292664 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_vertical.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o built in 0.225784 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelptmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelptmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/eoswatermod.mod cmake/lnd/CMakeFiles/lnd.dir/eoswatermod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o built in 0.263323 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobconstants.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobconstants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobvsfm.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobvsfm.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsvsfmtype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsvsfmtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/unstructuredgridtype.mod cmake/lnd/CMakeFiles/lnd.dir/unstructuredgridtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/conditiontype.mod cmake/lnd/CMakeFiles/lnd.dir/conditiontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/connectionsettype.mod cmake/lnd/CMakeFiles/lnd.dir/connectionsettype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/couplingvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/couplingvariabletype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/governingequationbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/governingequationbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/meshtype.mod cmake/lnd/CMakeFiles/lnd.dir/meshtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/solvertype.mod cmake/lnd/CMakeFiles/lnd.dir/solvertype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsbasepointertype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsbasepointertype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesswtype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesswtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesnowtype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesnowtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesoiltype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesoiltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobthermal.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobthermal.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermalauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermalauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermalauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermalauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermaltype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermaltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturebaseauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturebaseauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesswauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesswauxmod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.278371 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesswauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesswauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesnowauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesnowauxmod.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesnowauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesnowauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/arraydimthree.mod cmake/lnd/CMakeFiles/lnd.dir/arraydimthree.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o built in 0.939442 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/random_xgc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.202945 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/srchutil.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90:26:0: #include <mpif.h> ! mpi library include file Warning: extra tokens at end of #include directive Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o built in 0.241398 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_mesh_utils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_mesh_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_shr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_shr_log_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnrichardsodepressuretype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnrichardsodepressuretype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o built in 0.296465 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/porosityfunctionmod.mod cmake/lnd/CMakeFiles/lnd.dir/porosityfunctionmod.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/code_timer_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsmod.mod cmake/lnd/CMakeFiles/lnd.dir/richardsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/richardsodepressureauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/richardsodepressureauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureconnauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/richardsodepressureconnauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/saturationfunction.mod cmake/lnd/CMakeFiles/lnd.dir/saturationfunction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsvsfmauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsvsfmauxtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o built in 0.311216 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o built in 1.215281 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_meltpond.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o built in 0.269796 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_netcdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o built in 0.231615 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.250343 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o.provides.build make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o.provides.build Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.298393 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_esmf.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_esmf.mod.stamp GNU [ 24%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.siac -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90 -o CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_import_export.mod cmake/ice/CMakeFiles/ice.dir/ice_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_aerosol.mod cmake/ice/CMakeFiles/ice.dir/ice_aerosol.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_age.mod cmake/ice/CMakeFiles/ice.dir/ice_age.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_vertical.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_vertical.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fy.mod cmake/ice/CMakeFiles/ice.dir/ice_fy.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_fields.mod cmake/ice/CMakeFiles/ice.dir/ice_history_fields.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_lvl.mod cmake/ice/CMakeFiles/ice.dir/ice_lvl.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_meltpond.mod cmake/ice/CMakeFiles/ice.dir/ice_meltpond.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o built in 0.262090 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o.provides.build [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/marsaglia.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/getdatetime.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.157908 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o.provides.build [ 25%] Linking CXX static library libiac.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac && /usr/bin/cmake -E cmake_link_script CMakeFiles/iac.dir/link.txt --verbose=1 /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o.provides.build python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libiac.a CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o.provides.build Target libiac.a built in 0.002962 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libiac.a [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_diagnostics.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o Target libiac.a built in 0.004318 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 25%] Built target iac [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_history_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.213955 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o built in 0.284271 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/quicksort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o built in 0.213967 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o built in 0.302220 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/xpavg_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o built in 0.529576 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.254364 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.415537 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.280272 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.257211 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.281708 seconds [ 25%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp [ 25%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_slmm.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.247582 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 1.318696 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.355362 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o built in 0.581867 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.242504 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 1.482241 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o built in 0.254386 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiodimensionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiodimensionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.289962 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.341947 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.321976 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o built in 1.311567 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.174370 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.324164 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.146292 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_restoring.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o built in 0.267848 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o built in 0.307892 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o built in 0.342683 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_const_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_const_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_utils.mod cmake/lnd/CMakeFiles/lnd.dir/betr_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/func_data_type_mod.mod cmake/lnd/CMakeFiles/lnd.dir/func_data_type_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/somstatevarupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/somstatevarupdatemod.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o built in 0.280699 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o built in 0.239566 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/btridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/btridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurveclapphornberg1978mod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurveclapphornberg1978mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_cpl_indices.mod cmake/lnd/CMakeFiles/lnd.dir/elm_cpl_indices.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_finalizemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_finalizemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o built in 0.972675 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restoring.mod cmake/ice/CMakeFiles/ice.dir/ice_restoring.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_shortwave.mod cmake/ice/CMakeFiles/ice.dir/ice_shortwave.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o.provides.build [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_init.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landunittype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landunittype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varpar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/domainmod.mod cmake/lnd/CMakeFiles/lnd.dir/domainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesglobals.mod cmake/lnd/CMakeFiles/lnd.dir/fatesglobals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtparametersmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtparametersmod.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/column_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o built in 5.609216 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_infnan_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_infnan_mod.mod.stamp GNU [ 26%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_test.cpp Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o built in 0.831346 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_RunMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o built in 0.241156 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_log_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracer_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/tracer_varcon.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o built in 0.249820 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxtype.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o built in 0.327573 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o built in 1.117938 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.331953 seconds [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/datetime.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.322739 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o built in 1.456043 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_step_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o built in 0.250563 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.228911 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_abortutils.mod cmake/atm/CMakeFiles/atm.dir/cam_abortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_logfile.mod cmake/atm/CMakeFiles/atm.dir/cam_logfile.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o built in 7.664212 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mpishorthand.mod cmake/atm/CMakeFiles/atm.dir/mpishorthand.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_utils.mod cmake/atm/CMakeFiles/atm.dir/namelist_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ppgrid.mod cmake/atm/CMakeFiles/atm.dir/ppgrid.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/units.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o built in 0.295379 seconds [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o built in 0.305232 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatussimtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatussimtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o built in 0.280028 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod cmake/atm/CMakeFiles/atm.dir/infnan.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_instance.mod cmake/atm/CMakeFiles/atm.dir/cam_instance.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dycore.mod cmake/atm/CMakeFiles/atm.dir/dycore.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o built in 0.314502 seconds [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o.provides.build [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o built in 0.235101 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o built in 0.319421 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o built in 1.102992 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_init.mod cmake/ice/CMakeFiles/ice.dir/ice_init.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_runmod.mod cmake/ice/CMakeFiles/ice.dir/cice_runmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o.provides.build [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_InitMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o built in 0.250496 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o built in 0.638046 seconds [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/kinds.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.400510 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/thread_mod.mod cmake/atm/CMakeFiles/atm.dir/thread_mod.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o built in 0.244290 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/string_utils.mod cmake/atm/CMakeFiles/atm.dir/string_utils.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_nf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o built in 0.444915 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/params_mod.mod cmake/atm/CMakeFiles/atm.dir/params_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o built in 0.243258 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ll_mod.mod cmake/atm/CMakeFiles/atm.dir/ll_mod.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTGenericMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/column_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/column_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/domain_mod.mod cmake/atm/CMakeFiles/atm.dir/domain_mod.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o built in 0.442704 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sort_mod.mod cmake/atm/CMakeFiles/atm.dir/sort_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o built in 0.312773 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_types.mod cmake/atm/CMakeFiles/atm.dir/m_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiovariablekindmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiovariablekindmod.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/geopotential.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o built in 1.147121 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_initmod.mod cmake/ice/CMakeFiles/ice.dir/cice_initmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o.provides.build [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o built in 0.577675 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pspect.mod cmake/atm/CMakeFiles/atm.dir/pspect.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o built in 0.271904 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_mods.mod cmake/atm/CMakeFiles/atm.dir/chem_mods.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonstaterecvtype.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/buffer.F90 -o CMakeFiles/atm.dir/buffer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o built in 0.343794 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenstaterecvtype.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radconstants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o built in 0.341171 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusstaterecvtype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o built in 0.581591 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_sections.mod cmake/atm/CMakeFiles/atm.dir/sslt_sections.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/betr_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantnutkineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantnutkineticsmod.mod.stamp GNU make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp/CMakeFiles/esp.dir/DependInfo.cmake --color= Scanning dependencies of target esp make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o [ 27%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.146720 seconds Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o built in 0.915724 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_mct.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_mct.mod.stamp GNU [ 28%] Linking CXX static library libesp.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake [ 28%] Linking CXX static library libice.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && /usr/bin/cmake -P CMakeFiles/ice.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && /usr/bin/cmake -E cmake_link_script CMakeFiles/ice.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libice.a CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o built in 0.263536 seconds Target libesp.a built in 0.004507 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_regression_module.mod cmake/lnd/CMakeFiles/lnd.dir/betr_regression_module.mod.stamp GNU python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target libice.a built in 0.019991 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libice.a [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o Target libesp.a built in 0.004487 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' Target libice.a built in 0.024973 seconds [ 28%] Built target esp /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_cpl_indices.mod cmake/atm/CMakeFiles/atm.dir/cam_cpl_indices.mod.stamp GNU make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 28%] Built target ice /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srf_field_check.mod cmake/atm/CMakeFiles/atm.dir/srf_field_check.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/centuryecaouttype.mod cmake/lnd/CMakeFiles/lnd.dir/centuryecaouttype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_util.mod cmake/atm/CMakeFiles/atm.dir/mo_util.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_spc_id.mod cmake/atm/CMakeFiles/atm.dir/m_spc_id.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_function.mod cmake/atm/CMakeFiles/atm.dir/error_function.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_methods.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_methods.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o.provides.build [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o built in 0.268445 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydrowtfmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydrowtfmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateslittermod.mod cmake/lnd/CMakeFiles/lnd.dir/fateslittermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtgenericmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtgenericmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o built in 0.333241 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o built in 0.305743 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.329626 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.450799 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o Target CMakeFiles/atm.dir/buffer.F90.o built in 1.861390 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_factor.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_factor.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.680132 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o built in 0.277141 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o built in 0.316727 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o built in 0.262036 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o built in 0.246790 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_patchtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_patchtype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o built in 0.266531 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_inter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/QSatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o built in 0.291850 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_aerocondtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_aerocondtype.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_schu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o built in 0.310687 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o.provides.build [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o built in 0.241701 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o built in 0.356934 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_zadj.mod cmake/atm/CMakeFiles/atm.dir/mo_zadj.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o built in 0.328475 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_sad_data.mod cmake/atm/CMakeFiles/atm.dir/m_sad_data.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o built in 0.299377 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o built in 0.280168 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spehox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o built in 0.307499 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jpl.mod cmake/atm/CMakeFiles/atm.dir/mo_jpl.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o built in 0.361052 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rxt_rates_conv.mod cmake/atm/CMakeFiles/atm.dir/mo_rxt_rates_conv.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_heatnirco2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o built in 0.325262 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sv_decomp.mod cmake/atm/CMakeFiles/atm.dir/sv_decomp.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o built in 0.281900 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o built in 0.300312 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o.provides.build [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o built in 0.284637 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtlossfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtlossfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryvariabletype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartvariablemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartvariablemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeostatetype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeostatetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_columntype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_columntype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/biogeocontype.mod cmake/lnd/CMakeFiles/lnd.dir/biogeocontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_rxt_id.mod cmake/atm/CMakeFiles/atm.dir/m_rxt_id.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/qsatmod.mod cmake/lnd/CMakeFiles/lnd.dir/qsatmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o built in 0.264122 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cmparray_mod.mod cmake/atm/CMakeFiles/atm.dir/cmparray_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columntype.mod cmake/lnd/CMakeFiles/lnd.dir/columntype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbtpar.mod cmake/atm/CMakeFiles/atm.dir/hirsbtpar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parrrsw.mod cmake/atm/CMakeFiles/atm.dir/parrrsw.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o built in 0.452012 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelltype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunittype.mod cmake/lnd/CMakeFiles/lnd.dir/landunittype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationtype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parrrtm.mod cmake/atm/CMakeFiles/atm.dir/parrrtm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_random_numbers.mod cmake/atm/CMakeFiles/atm.dir/mcica_random_numbers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydraulicsmemmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydraulicsmemmod.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mersennetwister.mod cmake/atm/CMakeFiles/atm.dir/mersennetwister.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/ncdio_pio.F90 -o CMakeFiles/lnd.dir/ncdio_pio.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNDecompCascadeConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_sys_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_sys_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_con.mod cmake/atm/CMakeFiles/atm.dir/rrlw_con.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeCon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o built in 0.253606 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o built in 0.241364 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrlw_vsn.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PlantMicKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o built in 1.350277 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o built in 0.278092 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrlw_cld.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o built in 0.380714 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg01.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg01.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o built in 0.275449 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg02.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg02.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg03.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg03.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg04.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg04.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o built in 0.254855 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg05.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg05.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg06.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg06.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg07.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg07.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg08.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg08.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg09.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg09.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg10.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg10.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg11.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg11.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg12.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg12.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg13.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg13.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg14.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg14.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg15.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg15.mod.stamp GNU Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 1.164195 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg16.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg16.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrlw_tbl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrlw_ref.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_con.mod cmake/atm/CMakeFiles/atm.dir/rrsw_con.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_vsn.mod.stamp GNU [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.274994 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.453374 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrsw_cld.mod.stamp GNU [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.268822 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.263990 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.272349 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o built in 0.280537 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.266838 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.263211 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.254321 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o built in 0.235639 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.251104 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.271353 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.256882 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 2.051888 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.266716 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o built in 0.275219 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.275315 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o built in 0.285041 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.273343 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.mod.stamp GNU [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/GetGlobalValuesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.270204 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o built in 0.280181 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cndecompcascadecontype.mod cmake/lnd/CMakeFiles/lnd.dir/cndecompcascadecontype.mod.stamp GNU [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.312512 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrsw_tbl.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o built in 0.291465 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakecon.mod cmake/lnd/CMakeFiles/lnd.dir/lakecon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrsw_ref.mod.stamp GNU [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o built in 0.533120 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_vrtqdr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_vrtqdr.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o built in 0.273477 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/tridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_precision.mod cmake/atm/CMakeFiles/atm.dir/clubb_precision.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_code.mod cmake/atm/CMakeFiles/atm.dir/error_code.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantmickineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantmickineticsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/babortutils.mod cmake/lnd/CMakeFiles/lnd.dir/babortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_flags.mod cmake/atm/CMakeFiles/atm.dir/model_flags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameter_indices.mod cmake/atm/CMakeFiles/atm.dir/parameter_indices.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_bgctype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_bgctype.mod.stamp GNU [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o built in 0.311264 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_thtype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_thtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_interfaces.mod cmake/atm/CMakeFiles/atm.dir/lapack_interfaces.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o built in 0.371500 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initVerticalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/endian.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o built in 0.300928 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o built in 0.301267 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_names.mod cmake/atm/CMakeFiles/atm.dir/input_names.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/daylengthmod.mod cmake/lnd/CMakeFiles/lnd.dir/daylengthmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncolumntemplatemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncolumntemplatemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mt95.mod cmake/atm/CMakeFiles/atm.dir/mt95.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpriorweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpriorweightsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynedmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pbl_utils.mod cmake/atm/CMakeFiles/atm.dir/pbl_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/trb_mtn_stress.mod cmake/atm/CMakeFiles/atm.dir/trb_mtn_stress.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_utils.mod cmake/atm/CMakeFiles/atm.dir/gw_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vdiff_lu_solver.mod cmake/atm/CMakeFiles/atm.dir/vdiff_lu_solver.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o built in 0.287659 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_utils.mod cmake/atm/CMakeFiles/atm.dir/physics_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_data.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_data.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_5.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_arrays.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/math_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o built in 0.290636 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/parameters_silhs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o built in 0.318129 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/diffusion_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o built in 0.887482 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_timer_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_timer_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/getglobalvaluesmod.mod cmake/lnd/CMakeFiles/lnd.dir/getglobalvaluesmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o built in 0.254450 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edtypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edtypesmod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/restUtilMod.F90 -o CMakeFiles/lnd.dir/restUtilMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_assert_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_assert_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/random_xgc.mod cmake/atm/CMakeFiles/atm.dir/random_xgc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o built in 0.721124 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o built in 0.525832 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.644961 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/gauaw_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o built in 0.417678 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o built in 0.311395 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_dataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o built in 0.402357 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initverticalmod.mod cmake/lnd/CMakeFiles/lnd.dir/initverticalmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srchutil.mod cmake/atm/CMakeFiles/atm.dir/srchutil.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o.provides.build [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/vrtmap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o built in 0.289530 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o built in 0.395287 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ecuyer_random.mod cmake/atm/CMakeFiles/atm.dir/ecuyer_random.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.319968 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/restutilmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] Target CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o built in 0.246672 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o built in 0.555191 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesallometrymod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesallometrymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtracertype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtracertype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/kineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/kineticsmod.mod.stamp GNU [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scyc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o built in 0.420494 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_timemod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_timemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o built in 0.320006 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_datatype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_datatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o built in 0.828699 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/code_timer_module.mod cmake/atm/CMakeFiles/atm.dir/code_timer_module.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o built in 0.278452 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o built in 0.260077 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_string_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_string_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o built in 0.328800 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_netcdf.mod cmake/atm/CMakeFiles/atm.dir/output_netcdf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacetypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacetypesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_time_manager.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o built in 0.336815 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.563859 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mathfuncmod.mod cmake/lnd/CMakeFiles/lnd.dir/mathfuncmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o built in 0.277260 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/soilorder_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o built in 0.384719 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanParamsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o built in 0.297836 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParametersInterface.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o built in 1.449631 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/paramUtilMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o built in 0.424411 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.309568 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o built in 0.272852 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 1.175930 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.481958 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.306239 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.261686 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o built in 0.758826 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.252841 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.256250 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.276915 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.292263 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.367147 seconds [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o built in 0.352522 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o built in 0.461540 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerboundarycondtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerboundarycondtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.383585 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o built in 0.419267 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetwatisomod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetwatisomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o built in 0.568148 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 1.233888 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.360866 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.262832 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MEGANFactorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o built in 0.271588 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.881055 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.341545 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/marsaglia.mod cmake/atm/CMakeFiles/atm.dir/marsaglia.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.336895 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.307962 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.238140 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quicksort.mod cmake/atm/CMakeFiles/atm.dir/quicksort.mod.stamp GNU [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/sgexx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.473528 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o built in 0.278425 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initInterp.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o built in 0.551351 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BandDiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o built in 10.494367 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o built in 0.343146 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.259839 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o built in 0.918747 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.335284 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.776163 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 1.015541 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.301910 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 2.326306 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clm_time_manager.mod cmake/lnd/CMakeFiles/lnd.dir/clm_time_manager.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/bnddyi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.264963 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/pftvarcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounittype.mod cmake/lnd/CMakeFiles/lnd.dir/topounittype.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/AnnualFluxDribbler.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.308698 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4varcon.mod cmake/lnd/CMakeFiles/lnd.dir/ch4varcon.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.305188 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpatchstateupdatermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpatchstateupdatermod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/fft99.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o built in 0.373333 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationPropertiesType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o built in 0.496042 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilorder_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/soilorder_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/units.mod cmake/atm/CMakeFiles/atm.dir/units.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanparamstype.mod cmake/lnd/CMakeFiles/lnd.dir/urbanparamstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/drydep_mod.mod cmake/atm/CMakeFiles/atm.dir/drydep_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparametersinterface.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparametersinterface.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_messages.mod cmake/atm/CMakeFiles/atm.dir/error_messages.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/paramutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/paramutilmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_data.mod cmake/atm/CMakeFiles/atm.dir/interpolate_data.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o built in 0.616979 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o built in 0.356189 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/kinds.mod cmake/atm/CMakeFiles/atm.dir/kinds.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynTimeInfoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o built in 0.996857 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wrap_nf.mod cmake/atm/CMakeFiles/atm.dir/wrap_nf.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o built in 0.319203 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o built in 0.941134 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geopotential.mod cmake/atm/CMakeFiles/atm.dir/geopotential.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/time_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edaccumulatefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edaccumulatefluxesmod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tracname.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o built in 0.361401 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccarbonmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccarbonmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccnpmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccnpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/checksbalancesmod.mod cmake/lnd/CMakeFiles/lnd.dir/checksbalancesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/funcpedotransfermod.mod cmake/lnd/CMakeFiles/lnd.dir/funcpedotransfermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/quadraticmod.mod cmake/lnd/CMakeFiles/lnd.dir/quadraticmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/organicfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/organicfilemod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/RootBiophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o built in 0.300733 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sharedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sharedparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/buffer.mod cmake/atm/CMakeFiles/atm.dir/buffer.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o built in 0.282381 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridcontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridcontrolmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radconstants.mod cmake/atm/CMakeFiles/atm.dir/radconstants.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpindextype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpindextype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpcompettype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpcompettype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_indprd.mod cmake/atm/CMakeFiles/atm.dir/mo_indprd.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_prod_loss.mod cmake/atm/CMakeFiles/atm.dir/mo_prod_loss.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/findrootmod.mod cmake/lnd/CMakeFiles/lnd.dir/findrootmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_adjrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_adjrxt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lin_matrix.mod cmake/atm/CMakeFiles/atm.dir/mo_lin_matrix.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracercoefftype.mod cmake/lnd/CMakeFiles/lnd.dir/tracercoefftype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_nln_matrix.mod cmake/atm/CMakeFiles/atm.dir/mo_nln_matrix.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_negtrc.mod cmake/atm/CMakeFiles/atm.dir/mo_negtrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/interpolationmod.mod cmake/lnd/CMakeFiles/lnd.dir/interpolationmod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/filterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_inter.mod cmake/atm/CMakeFiles/atm.dir/mo_inter.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o built in 0.287980 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/bncdio_pio.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_schu.mod cmake/atm/CMakeFiles/atm.dir/mo_schu.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_calcoe.mod cmake/atm/CMakeFiles/atm.dir/mo_calcoe.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/chemstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/chemstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_phtadj.mod cmake/atm/CMakeFiles/atm.dir/mo_phtadj.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/SoilorderConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o built in 0.300800 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spehox.mod cmake/atm/CMakeFiles/atm.dir/spehox.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvefactorymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvefactorymod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o built in 0.361882 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_heatnirco2.mod cmake/atm/CMakeFiles/atm.dir/mo_heatnirco2.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/meganfactorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/meganfactorsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lsparsematmod.mod cmake/lnd/CMakeFiles/lnd.dir/lsparsematmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o built in 0.542525 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdgathscatmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdgathscatmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/domainlateralmod.mod cmake/lnd/CMakeFiles/lnd.dir/domainlateralmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncolumnstateupdatermod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncolumnstateupdatermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datadimensionmod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datadimensionmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/initinterpmod.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initSubgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o.provides.build [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridRestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o built in 0.326416 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/banddiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/banddiagonalmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_wvn.mod cmake/atm/CMakeFiles/atm.dir/rrlw_wvn.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_wvn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_wvn.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_aer.mod cmake/atm/CMakeFiles/atm.dir/rrsw_aer.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg16.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg16.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg17.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg17.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg18.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg18.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg19.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg19.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg20.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg20.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o built in 0.527736 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg21.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg21.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg22.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg22.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg23.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg23.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg24.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg24.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg25.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg25.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg26.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg26.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg27.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg27.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg28.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg28.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg29.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg29.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_nl_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_nl_mod.mod.stamp GNU [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o built in 0.680111 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columnmod.mod cmake/lnd/CMakeFiles/lnd.dir/columnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitmod.mod cmake/lnd/CMakeFiles/lnd.dir/landunitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/patchmod.mod cmake/lnd/CMakeFiles/lnd.dir/patchmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o.provides.build [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/accumulMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o built in 0.423545 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridAveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.443525 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o built in 0.491786 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationpropertiestype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationpropertiestype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_reftra.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_reftra.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.466734 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o built in 0.366859 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o built in 0.261166 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/array_index.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o built in 1.011453 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtinitparamsfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtinitparamsfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyntimeinfomod.mod cmake/lnd/CMakeFiles/lnd.dir/dyntimeinfomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o built in 0.294430 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.298233 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/constants_clubb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o built in 0.393897 seconds [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.302551 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/filtermod.mod cmake/lnd/CMakeFiles/lnd.dir/filtermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_model.mod cmake/atm/CMakeFiles/atm.dir/parameters_model.mod.stamp GNU [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o built in 1.140120 seconds [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o built in 0.283678 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stat_file_module.mod cmake/atm/CMakeFiles/atm.dir/stat_file_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbalancemod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbalancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilordercontype.mod cmake/lnd/CMakeFiles/lnd.dir/soilordercontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/endian.mod cmake/atm/CMakeFiles/atm.dir/endian.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ComputeSeedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o built in 0.261448 seconds [ 41%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o built in 0.317029 seconds [ 41%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o built in 0.384352 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_5.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_5.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.352993 seconds [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o built in 1.203847 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_arrays.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_arrays.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.251242 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/math_utilities.mod cmake/atm/CMakeFiles/atm.dir/math_utilities.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.255866 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o built in 0.220415 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_silhs.mod cmake/atm/CMakeFiles/atm.dir/parameters_silhs.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion_solver.mod cmake/atm/CMakeFiles/atm.dir/diffusion_solver.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.238617 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.270157 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gauaw_mod.mod cmake/atm/CMakeFiles/atm.dir/gauaw_mod.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 1.046797 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.252521 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o built in 0.280377 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.347529 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initsubgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/initsubgridmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vrtmap_mod.mod cmake/atm/CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o built in 0.372374 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o built in 0.360078 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scyc.mod cmake/atm/CMakeFiles/atm.dir/scyc.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o built in 0.463484 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o built in 0.527094 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/accumulmod.mod cmake/lnd/CMakeFiles/lnd.dir/accumulmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o built in 1.052101 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridavemod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridavemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessynchronizedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessynchronizedparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpforctype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpforctype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/odemod.mod cmake/lnd/CMakeFiles/lnd.dir/odemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgcmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_pflotranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/transportmod.mod cmake/lnd/CMakeFiles/lnd.dir/transportmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.287101 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o built in 0.304313 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o built in 0.333778 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bhistfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/bhistfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/computeseedmod.mod cmake/lnd/CMakeFiles/lnd.dir/computeseedmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o built in 0.324293 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sgexx.mod cmake/atm/CMakeFiles/atm.dir/sgexx.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_datamod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o built in 0.323028 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_datamod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_datamod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90:53:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o built in 0.553889 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDPftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o built in 11.727305 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o built in 0.237704 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_mod.mod cmake/atm/CMakeFiles/atm.dir/time_mod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.278377 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tracname.mod cmake/atm/CMakeFiles/atm.dir/mo_tracname.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 0.968935 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_setrxt.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o built in 0.442991 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o built in 0.387435 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_pflotranmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_pflotranmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o built in 0.295108 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/diocplantsoilbgctype.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.409747 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopeplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopeplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/mockplantsoilbgctype.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o built in 1.170473 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o built in 0.447067 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o built in 3.139781 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o built in 0.332436 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o built in 0.464265 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.702505 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/histfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/histfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarMod.F90 -o CMakeFiles/lnd.dir/dynVarMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o built in 0.712473 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.352271 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o built in 0.318021 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_setcoef.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o built in 1.522255 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessizeagetypeindicesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessizeagetypeindicesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprmc.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.314698 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprop.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o built in 0.480900 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_taumol.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/EnergyFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o built in 0.514510 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o built in 0.483993 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/array_index.mod cmake/atm/CMakeFiles/atm.dir/array_index.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o built in 1.665299 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constants_clubb.mod cmake/atm/CMakeFiles/atm.dir/constants_clubb.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o built in 0.359164 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o built in 0.465695 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o built in 0.339597 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.265651 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SolarAbsorbedType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o built in 0.498708 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o built in 0.954361 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.403254 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.317280 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 0.780159 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o built in 0.654346 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.334654 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_roots.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o built in 0.388325 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o built in 0.883314 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o built in 2.030377 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.343389 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o built in 0.412364 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 12.115602 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.849308 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_tsdadg_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o built in 0.330125 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o built in 0.386889 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.611761 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sigma_sqd_w_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o built in 0.406370 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.340658 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calendar.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o built in 0.685448 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.331531 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpdecomptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpdecomptype.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.444723 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionsmod.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o built in 0.697534 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Nc_Ncn_eqns.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.360540 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgccnptype.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgccnptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_diffusion.mod cmake/atm/CMakeFiles/atm.dir/gw_diffusion.mod.stamp GNU [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o built in 0.353229 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_utils.mod.stamp GNU [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o built in 0.313230 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.324383 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/transform_to_pdf_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o built in 0.611108 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scream_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o built in 0.798326 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o built in 0.318631 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o built in 0.421547 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrn.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o.provides.build [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.908699 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o built in 0.893889 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glcDiagnosticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o built in 0.805984 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_utils.mod cmake/atm/CMakeFiles/atm.dir/spmd_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sim_dat.mod cmake/atm/CMakeFiles/atm.dir/mo_sim_dat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_lw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_lw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_setcoef.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_taumol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_sw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_sw.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o built in 0.299397 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o built in 0.492086 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/interpolation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o built in 0.285760 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 0.386472 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o built in 0.357022 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.356254 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type.mod cmake/atm/CMakeFiles/atm.dir/stats_type.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o built in 1.078685 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/t_in_k_module.mod cmake/atm/CMakeFiles/atm.dir/t_in_k_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_wrap.mod cmake/atm/CMakeFiles/atm.dir/lapack_wrap.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/index_mapping.mod cmake/atm/CMakeFiles/atm.dir/index_mapping.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o.provides.build [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_parameter_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_parameter_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_semi_implicit.mod cmake/atm/CMakeFiles/atm.dir/clip_semi_implicit.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calc_roots.mod cmake/atm/CMakeFiles/atm.dir/calc_roots.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o built in 0.421226 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ly93_pdf.mod cmake/atm/CMakeFiles/atm.dir/ly93_pdf.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.579919 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf.mod.stamp GNU [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/CNStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o built in 1.132079 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o built in 12.817593 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_tsdadg_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_tsdadg_pdf.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o built in 0.587336 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_utilities.mod cmake/atm/CMakeFiles/atm.dir/pdf_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sigma_sqd_w_module.mod cmake/atm/CMakeFiles/atm.dir/sigma_sqd_w_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calendar.mod cmake/atm/CMakeFiles/atm.dir/calendar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_operations.mod cmake/atm/CMakeFiles/atm.dir/matrix_operations.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hydromet_pdf_parameter_module.mod cmake/atm/CMakeFiles/atm.dir/hydromet_pdf_parameter_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diagnose_correlations_module.mod cmake/atm/CMakeFiles/atm.dir/diagnose_correlations_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nc_ncn_eqns.mod cmake/atm/CMakeFiles/atm.dir/nc_ncn_eqns.mod.stamp GNU [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o built in 1.873038 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/est_kessler_microphys_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 2.833360 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/generate_uniform_sample_module.mod cmake/atm/CMakeFiles/atm.dir/generate_uniform_sample_module.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o built in 0.358189 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_paraminterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o built in 1.153582 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/transform_to_pdf_module.mod cmake/atm/CMakeFiles/atm.dir/transform_to_pdf_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scream_abortutils.mod cmake/atm/CMakeFiles/atm.dir/scream_abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o built in 0.356307 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvarmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvarmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvrt.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvrt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusfluxtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplanthydraulicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplanthydraulicsmod.mod.stamp GNU [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/physconst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_control_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.806431 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o built in 0.295532 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparameterderivedmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparameterderivedmod.mod.stamp GNU [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o built in 0.391887 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o built in 0.470929 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ioFileMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o built in 0.611761 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessoilbgcfluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessoilbgcfluxmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.729524 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfmainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/energyfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/energyfluxtype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o built in 3.326085 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryinterfacemod.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitytype.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitytype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesistype.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesistype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod cmake/atm/CMakeFiles/atm.dir/file_functions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/soilstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolation.mod cmake/atm/CMakeFiles/atm.dir/interpolation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/solarabsorbedtype.mod cmake/lnd/CMakeFiles/lnd.dir/solarabsorbedtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/saturation.mod cmake/atm/CMakeFiles/atm.dir/saturation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfacealbedotype.mod cmake/lnd/CMakeFiles/lnd.dir/surfacealbedotype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/topounitdatatype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/waterfluxtype.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/waterstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakestatetype.mod cmake/lnd/CMakeFiles/lnd.dir/lakestatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmtype.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologytype.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologytype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelldatatype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelldatatype.mod.stamp GNU [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o built in 0.333512 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.335229 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o built in 0.312960 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o built in 0.339345 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.439699 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_tunable.mod cmake/atm/CMakeFiles/atm.dir/parameters_tunable.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o built in 0.792470 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_pdf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/diocbgcreactionstype.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_reader.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o built in 0.435940 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopebgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopebgcreactionstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_common.mod cmake/atm/CMakeFiles/atm.dir/gw_common.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/mockbgcreactionstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/est_kessler_microphys_module.mod cmake/atm/CMakeFiles/atm.dir/est_kessler_microphys_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_importance_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o built in 0.845020 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glcdiagnosticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/glcdiagnosticsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/landunitdatatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/sedfluxtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o.provides.build [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o built in 0.514921 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.272874 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o.provides.build [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.316657 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.239418 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o.provides.build [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 2.908204 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.240100 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod cmake/atm/CMakeFiles/atm.dir/physconst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_control_mod.mod cmake/atm/CMakeFiles/atm.dir/cam_control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_map_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_map_utils.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.244986 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o built in 0.250958 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physical_constants.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o built in 0.339459 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o built in 0.340001 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o built in 0.288911 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/glb_verif_smry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.276620 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_manager.mod cmake/atm/CMakeFiles/atm.dir/time_manager.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o built in 0.397211 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iofilemod.mod cmake/atm/CMakeFiles/atm.dir/iofilemod.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.276501 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/time_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o built in 0.251663 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/filenames.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.620213 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 3.422809 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o built in 0.299860 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o.provides.build [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initGridCellsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o built in 0.345873 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.399269 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o built in 0.285568 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o built in 0.362863 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o built in 0.288731 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rad.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o.provides.build [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.382669 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o built in 0.277851 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopystatetype.mod cmake/lnd/CMakeFiles/lnd.dir/canopystatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenfluxtype.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o built in 0.946270 seconds [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o built in 1.082327 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndtype.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndtype.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/grid_class.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o built in 0.678872 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clmfatesparaminterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/clmfatesparaminterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_type_utilities.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o built in 1.294281 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_variables.mod cmake/atm/CMakeFiles/atm.dir/stats_variables.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o Target CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o built in 0.296087 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf_main.mod.stamp GNU [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o built in 0.333869 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o built in 0.346560 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_grads.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o built in 0.300399 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o built in 0.871925 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 3.127429 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edloggingmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/edloggingmortalitymod.mod.stamp GNU [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o built in 0.510906 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.301601 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.372195 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o.provides.build [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o built in 0.297300 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpnitdentype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpnitdentype.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.326152 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentsomtype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentsomtype.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o built in 0.353334 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitymod.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitymod.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VerticalProfileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o built in 1.207700 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o built in 0.553485 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_reader.mod cmake/atm/CMakeFiles/atm.dir/input_reader.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/betrbgcmod.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 1.019500 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o built in 0.512391 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glc2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o built in 0.289281 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.377599 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o built in 1.210311 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_oro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.320719 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynlandunitareamod.mod cmake/lnd/CMakeFiles/lnd.dir/dynlandunitareamod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/output_2D_samples_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o built in 0.297500 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeinterpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_importance_sample_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_importance_sample_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reweightmod.mod cmake/lnd/CMakeFiles/lnd.dir/reweightmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o.provides.build [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o built in 2.206735 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o built in 0.398590 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o built in 0.318550 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_exchange.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tsinti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o built in 0.303984 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_filter_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_filter_exchange.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_landunit_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_exchange.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initgridcellsmod.mod cmake/lnd/CMakeFiles/lnd.dir/initgridcellsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o.provides.build [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o built in 0.256495 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_constants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o built in 0.404673 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_sediment_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o built in 0.280368 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/comsrf.mod cmake/atm/CMakeFiles/atm.dir/comsrf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituents.mod cmake/atm/CMakeFiles/atm.dir/constituents.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o built in 0.408715 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physical_constants.mod cmake/atm/CMakeFiles/atm.dir/physical_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/glb_verif_smry.mod cmake/atm/CMakeFiles/atm.dir/glb_verif_smry.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/quadrature_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_utils.mod cmake/atm/CMakeFiles/atm.dir/time_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/filenames.mod cmake/atm/CMakeFiles/atm.dir/filenames.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/gas_wetdep_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o built in 0.438243 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_saturation.mod cmake/atm/CMakeFiles/atm.dir/wv_saturation.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_params.mod cmake/atm/CMakeFiles/atm.dir/mo_params.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/orbit.mod cmake/atm/CMakeFiles/atm.dir/orbit.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbt.mod cmake/atm/CMakeFiles/atm.dir/hirsbt.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_init.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_init.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_init.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_init.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o built in 0.312109 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_rad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/grid_class.mod cmake/atm/CMakeFiles/atm.dir/grid_class.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenstatetype.mod.stamp GNU [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o built in 0.453708 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_pdf_main.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Skx_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeuninterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeuninterpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_grads.mod cmake/atm/CMakeFiles/atm.dir/output_grads.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_sfc_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_sfc_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edbtranmod.mod cmake/lnd/CMakeFiles/lnd.dir/edbtranmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_zt_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcohortdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edcohortdynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zm_module.mod.stamp GNU [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o built in 0.314554 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zt_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_sfc_module.mod cmake/atm/CMakeFiles/atm.dir/stats_sfc_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zt_module.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/corr_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o built in 0.355610 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/precipitation_fraction.mod cmake/atm/CMakeFiles/atm.dir/precipitation_fraction.mod.stamp GNU [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o built in 0.421426 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_convect.mod cmake/atm/CMakeFiles/atm.dir/gw_convect.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_front.mod cmake/atm/CMakeFiles/atm.dir/gw_front.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_oro.mod cmake/atm/CMakeFiles/atm.dir/gw_oro.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.943012 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_2d_samples_module.mod cmake/atm/CMakeFiles/atm.dir/output_2d_samples_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacemod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/lh_microphys_var_covar_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o built in 0.666869 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o.provides.build [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o built in 0.371887 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/verticalprofilemod.mod cmake/lnd/CMakeFiles/lnd.dir/verticalprofilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o built in 0.459032 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reactionsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/reactionsfactory.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o.provides.build [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_constants.mod cmake/atm/CMakeFiles/atm.dir/mo_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.297640 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_control.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.693118 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quadrature_mod.mod cmake/atm/CMakeFiles/atm.dir/quadrature_mod.mod.stamp GNU [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o built in 0.304855 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gas_wetdep_opts.mod cmake/atm/CMakeFiles/atm.dir/gas_wetdep_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.460117 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o built in 0.387324 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.317592 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.290525 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.292112 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.456294 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.314767 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.318927 seconds [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o built in 0.319072 seconds [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.272167 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.285683 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_explicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.313636 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o built in 0.476088 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonstatetype.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.678512 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmortalityfunctionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmortalityfunctionsmod.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.472841 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edphysiologymod.mod cmake/lnd/CMakeFiles/lnd.dir/edphysiologymod.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.319776 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.322438 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnptype.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.548671 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.420875 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelstubmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelstubmod.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.416189 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o built in 0.297683 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/numerical_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o built in 0.366283 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o built in 0.360831 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/skx_module.mod cmake/atm/CMakeFiles/atm.dir/skx_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/corr_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/corr_varnce_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lh_microphys_var_covar_module.mod cmake/atm/CMakeFiles/atm.dir/lh_microphys_var_covar_module.mod.stamp GNU [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o built in 0.634881 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.800260 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o built in 0.348484 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o built in 1.136264 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dimensions_mod.mod cmake/atm/CMakeFiles/atm.dir/dimensions_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_control.mod cmake/atm/CMakeFiles/atm.dir/phys_control.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/element_state.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o built in 0.366128 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chem_utls.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o built in 0.289643 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpatchdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edpatchdynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airmas.mod cmake/atm/CMakeFiles/atm.dir/mo_airmas.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveall.mod cmake/atm/CMakeFiles/atm.dir/mo_waveall.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveo3.mod cmake/atm/CMakeFiles/atm.dir/mo_waveo3.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o built in 0.311607 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ps2str.mod cmake/atm/CMakeFiles/atm.dir/mo_ps2str.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setair.mod cmake/atm/CMakeFiles/atm.dir/mo_setair.mod.stamp GNU [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setcld.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.328962 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lymana.mod cmake/atm/CMakeFiles/atm.dir/mo_lymana.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelen.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelen.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o built in 0.218000 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o.provides.build [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physics_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.898824 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cldoptics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o built in 0.263263 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 2.411228 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInventoryInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_helper_module.mod cmake/atm/CMakeFiles/atm.dir/advance_helper_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcanopystructuremod.mod cmake/lnd/CMakeFiles/lnd.dir/edcanopystructuremod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_explicit.mod cmake/atm/CMakeFiles/atm.dir/clip_explicit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionscentecacnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionscentecacnptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion.mod cmake/atm/CMakeFiles/atm.dir/diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mean_adv.mod cmake/atm/CMakeFiles/atm.dir/mean_adv.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sponge_layer_damping.mod cmake/atm/CMakeFiles/atm.dir/sponge_layer_damping.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o built in 0.329697 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/fill_holes.mod cmake/atm/CMakeFiles/atm.dir/fill_holes.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mono_flux_limiter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o built in 0.648059 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pos_definite_module.mod cmake/atm/CMakeFiles/atm.dir/pos_definite_module.mod.stamp GNU [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o built in 0.642048 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/turbulent_adv_pdf.mod cmake/atm/CMakeFiles/atm.dir/turbulent_adv_pdf.mod.stamp GNU [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o built in 0.884628 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp3_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calc_pressure.mod cmake/atm/CMakeFiles/atm.dir/calc_pressure.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/numerical_check.mod cmake/atm/CMakeFiles/atm.dir/numerical_check.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/adg1_adg2_3d_luhar_pdf.mod cmake/atm/CMakeFiles/atm.dir/adg1_adg2_3d_luhar_pdf.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.374149 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.957736 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 1.169580 seconds [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/setup_clubb_pdf_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o built in 18.838780 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o built in 0.411569 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinventoryinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinventoryinitmod.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o built in 0.952438 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edsurfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/edsurfaceradiationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplantrespphotosynthmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplantrespphotosynthmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/applicationsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/applicationsfactory.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columndatatype.mod cmake/lnd/CMakeFiles/lnd.dir/columndatatype.mod.stamp GNU [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.667903 seconds [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 2.398303 seconds [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.468126 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o built in 0.434261 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o built in 2.887728 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o built in 0.495417 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.402560 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.766972 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.745329 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.494759 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 1.390275 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.510097 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.724984 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o built in 0.383733 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 4.838064 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o built in 2.262081 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o built in 0.243144 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o built in 0.499063 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/cldaero_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o built in 0.324658 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_common.mod cmake/atm/CMakeFiles/atm.dir/dust_common.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o built in 1.263435 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_state.mod cmake/atm/CMakeFiles/atm.dir/element_state.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chem_utls.mod cmake/atm/CMakeFiles/atm.dir/mo_chem_utls.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.353386 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o built in 0.752732 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.393714 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/edinitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropharvestpoolsmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropharvestpoolsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.520221 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceresistancemod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceresistancemod.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittverttranspmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittverttranspmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosolmod.mod cmake/lnd/CMakeFiles/lnd.dir/aerosolmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/drydepvelocity.mod cmake/lnd/CMakeFiles/lnd.dir/drydepvelocity.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o built in 1.480278 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dustmod.mod cmake/lnd/CMakeFiles/lnd.dir/dustmod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_wp2_wp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o built in 0.321946 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mono_flux_limiter.mod cmake/atm/CMakeFiles/atm.dir/mono_flux_limiter.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o built in 1.375925 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mixing_length.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o built in 0.971641 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_closure_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o built in 3.361130 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sfc_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/sfc_varnce_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/erosionmod.mod cmake/lnd/CMakeFiles/lnd.dir/erosionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_clubb_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_clubb_utilities.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/setup_clubb_pdf_params.mod cmake/atm/CMakeFiles/atm.dir/setup_clubb_pdf_params.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_0.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_driver_module.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_driver_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterbudgetmod.mod cmake/lnd/CMakeFiles/lnd.dir/waterbudgetmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanalbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanalbedomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o.provides.build [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o built in 4.646651 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parallel_mod.mod cmake/atm/CMakeFiles/atm.dir/parallel_mod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/charge_neutrality.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o built in 0.251670 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mass_xforms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o built in 0.221509 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mean_mass.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o built in 0.217270 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_xsections.mod cmake/atm/CMakeFiles/atm.dir/mo_xsections.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rtlink.mod cmake/atm/CMakeFiles/atm.dir/mo_rtlink.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/set_cp.mod cmake/atm/CMakeFiles/atm.dir/set_cp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xm_wpxp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 2.634093 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mixing_length.mod cmake/atm/CMakeFiles/atm.dir/mixing_length.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 4.740281 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.453119 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.396182 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.303185 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o built in 0.391793 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.320043 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod cmake/atm/CMakeFiles/atm.dir/charge_neutrality.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mass_xforms.mod cmake/atm/CMakeFiles/atm.dir/mo_mass_xforms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mean_mass.mod cmake/atm/CMakeFiles/atm.dir/mo_mean_mass.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.334083 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_closure_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_closure_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_api_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybrid_mod.mod cmake/atm/CMakeFiles/atm.dir/hybrid_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/control_mod.mod cmake/atm/CMakeFiles/atm.dir/control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 4.671847 seconds [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/reduction_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.335705 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o built in 0.472778 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.478863 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod cmake/atm/CMakeFiles/atm.dir/gridgraph_mod.mod.stamp GNU [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.400497 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.306225 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.363373 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.466699 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 0.911207 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybvcoord_mod.mod cmake/atm/CMakeFiles/atm.dir/hybvcoord_mod.mod.stamp GNU [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.495410 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.718855 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pmgrid.mod cmake/atm/CMakeFiles/atm.dir/pmgrid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_mod.mod cmake/atm/CMakeFiles/atm.dir/element_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 17.136210 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 1.244921 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.686989 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.450490 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.422351 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o built in 0.293143 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 1.410517 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.484707 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.608585 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 12.662369 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.601962 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 1.198014 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp GNU [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 8.748397 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg2_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.700326 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedtype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.836457 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cube_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.520940 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o built in 0.293086 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o built in 0.353306 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GrowthRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.383299 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod_base.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod_base.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o built in 0.359715 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eos.mod cmake/atm/CMakeFiles/atm.dir/eos.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.433918 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rgrid.mod cmake/atm/CMakeFiles/atm.dir/rgrid.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o built in 0.395894 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.549865 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.578223 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_clubb_core_module.mod cmake/atm/CMakeFiles/atm.dir/advance_clubb_core_module.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o built in 1.459443 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o built in 0.400481 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedtype_mod.mod cmake/atm/CMakeFiles/atm.dir/schedtype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cube_mod.mod cmake/atm/CMakeFiles/atm.dir/cube_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.204026 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/element_ops.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 0.905093 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 0.704363 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 0.911888 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.365920 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o built in 0.639170 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o built in 0.477242 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o built in 0.426616 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedule_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 0.887443 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.345088 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o built in 0.671345 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.496947 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/temperaturetype.mod cmake/lnd/CMakeFiles/lnd.dir/temperaturetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynharvestmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynharvestmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/annualupdatemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/c14decaymod.mod cmake/lnd/CMakeFiles/lnd.dir/c14decaymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o built in 0.475696 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 0.812324 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonisofluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonisofluxmod.mod.stamp GNU [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edge_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 1.671998 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_ops.mod cmake/atm/CMakeFiles/atm.dir/element_ops.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zoltan_mod.mod cmake/atm/CMakeFiles/atm.dir/zoltan_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cngapmortalitybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cngapmortalitybetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scalable_grid_init_mod.mod cmake/atm/CMakeFiles/atm.dir/scalable_grid_init_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate1betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate1betrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate2betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate2betrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geometry_mod.mod cmake/atm/CMakeFiles/atm.dir/geometry_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate3betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate3betrmod.mod.stamp GNU [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/imex_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o built in 1.207009 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o built in 1.033397 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o built in 0.598010 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o built in 3.167009 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o built in 0.333318 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedule_mod.mod cmake/atm/CMakeFiles/atm.dir/schedule_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_derived_type_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 0.828076 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o built in 3.493715 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o built in 0.292600 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o built in 0.478400 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o built in 1.321916 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o built in 0.410421 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2glcMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o built in 0.333484 seconds [ 73%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VOCEmissionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o built in 1.007937 seconds [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o built in 0.529575 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/imex_mod.mod cmake/atm/CMakeFiles/atm.dir/imex_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mesh_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate2mod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o built in 0.331537 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/precisioncontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/precisioncontrolmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_pio_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o built in 0.439267 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/edge_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o built in 0.911896 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/mesh_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystembalancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystembalancecheckmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/horizontal_interpolate.mod cmake/atm/CMakeFiles/atm.dir/horizontal_interpolate.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gapmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/gapmortalitymod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o built in 2.130987 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/readinitial.mod cmake/atm/CMakeFiles/atm.dir/readinitial.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/se_single_column_mod.mod cmake/atm/CMakeFiles/atm.dir/se_single_column_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridadjustmentsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridadjustmentsmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/interpolate_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.311076 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TotalWaterAndHeatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o built in 0.804534 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.377569 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.331476 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_pio_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_pio_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod.mod cmake/atm/CMakeFiles/atm.dir/edge_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.435506 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 0.696221 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_solar_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/solar_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o built in 0.876043 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o built in 0.359044 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o built in 0.497221 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/input_data_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.409265 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_prop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 0.506380 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 1.005271 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 1.501477 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.369568 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 0.830847 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o built in 0.775573 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.417978 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.466858 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.509463 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.340365 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.291588 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o built in 0.936830 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/bndry_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o built in 1.544752 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_interfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o built in 0.793968 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solar_parms.mod cmake/atm/CMakeFiles/atm.dir/mo_solar_parms.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solar_data.mod cmake/atm/CMakeFiles/atm.dir/solar_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4mod.mod cmake/lnd/CMakeFiles/lnd.dir/ch4mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilmoiststressmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilmoiststressmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_data_utils.mod cmake/atm/CMakeFiles/atm.dir/input_data_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyhydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_prop.mod cmake/atm/CMakeFiles/atm.dir/phys_prop.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrifDenitrifMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.701577 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowsnicarmod.mod cmake/lnd/CMakeFiles/lnd.dir/snowsnicarmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mag_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o built in 0.306788 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/maintenancerespmod.mod cmake/lnd/CMakeFiles/lnd.dir/maintenancerespmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/euvac.mod cmake/atm/CMakeFiles/atm.dir/euvac.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulation.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulation.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 0.746061 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o built in 1.862154 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_seto2.mod cmake/atm/CMakeFiles/atm.dir/mo_seto2.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o built in 0.973192 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tuv_inti.mod cmake/atm/CMakeFiles/atm.dir/mo_tuv_inti.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o built in 0.818160 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spedata.mod cmake/atm/CMakeFiles/atm.dir/spedata.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/activelayermod.mod cmake/lnd/CMakeFiles/lnd.dir/activelayermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_initfiles.mod cmake/atm/CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rad_solar_var.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o built in 0.314066 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_esmf.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_grid_support.mod cmake/atm/CMakeFiles/atm.dir/cam_grid_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod_base.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod_base.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ncdio_atm.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o built in 2.716066 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mag_parms.mod cmake/atm/CMakeFiles/atm.dir/mag_parms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/totalwaterandheatmod.mod cmake/lnd/CMakeFiles/lnd.dir/totalwaterandheatmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jshort.mod cmake/atm/CMakeFiles/atm.dir/mo_jshort.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyninitcolumnsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dyninitcolumnsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jlong.mod cmake/atm/CMakeFiles/atm.dir/mo_jlong.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_exchangemod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o built in 1.311687 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o built in 1.073498 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.342987 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o built in 0.751027 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/snowhydrologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/lakefluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.545624 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 0.884346 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.727172 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 0.797411 seconds Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.306800 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_support.mod cmake/atm/CMakeFiles/atm.dir/cam_history_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 1.049523 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_theta.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dof_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o built in 0.341651 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/global_norms_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o built in 0.450969 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o built in 0.499221 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.482481 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/croptype.mod cmake/lnd/CMakeFiles/lnd.dir/croptype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o built in 0.758353 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elmfatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/elmfatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dof_mod.mod cmake/atm/CMakeFiles/atm.dir/dof_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o built in 0.697642 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/global_norms_mod.mod cmake/atm/CMakeFiles/atm.dir/global_norms_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_base.mod cmake/atm/CMakeFiles/atm.dir/viscosity_base.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hycoef.mod cmake/atm/CMakeFiles/atm.dir/hycoef.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cg_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o built in 1.822284 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.311460 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.457344 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o built in 0.504146 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/pdelb0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o built in 0.857633 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.275159 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o built in 0.318786 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o built in 0.315464 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cg_mod.mod cmake/atm/CMakeFiles/atm.dir/cg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_si_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_si_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/solver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 1.214799 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 1.052541 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.480444 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o built in 0.767560 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceradiationmod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 0.841355 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 0.912988 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.584290 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 2.160504 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.384223 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o built in 0.501939 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sl_advection.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 1.260454 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 3.709548 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o built in 1.088229 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dyncropFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/baregroundfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/baregroundfluxesmod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o built in 0.328727 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_state_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_state_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advance_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o built in 0.563735 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakehydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/lakehydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/laketemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/laketemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o built in 1.084138 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sl_advection.mod cmake/atm/CMakeFiles/atm.dir/sl_advection.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate1mod.mod.stamp GNU [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AllocationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advection_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o built in 0.333524 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadebgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadebgcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadecnmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadecnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfacealbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/surfacealbedomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogendynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogendynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulationalm.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulationalm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologyfluxlimitmod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologyfluxlimitmod.mod.stamp GNU [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o built in 2.464944 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_driver_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 3.761279 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_implicit_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o built in 1.079922 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegstructupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/vegstructupdatemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeophysmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncropfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncropfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.281476 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 2.800297 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/prim_driver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_util_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.302232 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o built in 0.746330 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_grid.mod cmake/atm/CMakeFiles/atm.dir/dyn_grid.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 1.239477 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.483523 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ref_pres.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o built in 0.346292 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/namelist_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o built in 2.082330 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.643379 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o built in 6.511594 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod cmake/atm/CMakeFiles/atm.dir/phys_grid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_data_flux.mod cmake/atm/CMakeFiles/atm.dir/co2_data_flux.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/allocationmod.mod cmake/lnd/CMakeFiles/lnd.dir/allocationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ref_pres.mod cmake/atm/CMakeFiles/atm.dir/ref_pres.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_mod.mod cmake/atm/CMakeFiles/atm.dir/namelist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/debug_info.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 2.693911 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.319306 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.328805 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.708703 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.768202 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers_suite.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o built in 0.389702 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radae.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 1.313661 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittdecompmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittdecompmod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o built in 2.260730 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.408042 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.355392 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 1.506467 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.306228 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.290174 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 3.390920 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.300365 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnallocationbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnallocationbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.498851 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 0.924790 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o built in 0.735521 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o built in 1.957184 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o built in 3.383440 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/soil_erod_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o built in 0.378228 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/polar_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o built in 2.293445 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_synoz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o built in 1.058784 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_funcsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_funcsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyfluxesmod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sethet.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 0.950780 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/readparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/readparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o built in 0.421763 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopytemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/canopytemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_msis_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o built in 0.405649 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/controlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o built in 0.391516 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o built in 0.420394 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug_util.mod cmake/atm/CMakeFiles/atm.dir/phys_debug_util.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hk_conv.mod cmake/atm/CMakeFiles/atm.dir/hk_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/debug_info.mod cmake/atm/CMakeFiles/atm.dir/debug_info.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat.mod cmake/atm/CMakeFiles/atm.dir/cldwat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers_suite.mod cmake/atm/CMakeFiles/atm.dir/tracers_suite.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radae.mod cmake/atm/CMakeFiles/atm.dir/radae.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/module_perturb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.472755 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o built in 0.297865 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_types.mod cmake/atm/CMakeFiles/atm.dir/physics_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interp_mod.mod cmake/atm/CMakeFiles/atm.dir/interp_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sat_hist.mod cmake/atm/CMakeFiles/atm.dir/sat_hist.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/soil_erod_mod.mod cmake/atm/CMakeFiles/atm.dir/soil_erod_mod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/subcol_utils.F90 -o CMakeFiles/atm.dir/subcol_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/polar_avg.mod cmake/atm/CMakeFiles/atm.dir/polar_avg.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/dust_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o built in 1.237371 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 1.088663 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/boundarydata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.338116 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.576748 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sethet.mod cmake/atm/CMakeFiles/atm.dir/mo_sethet.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o built in 0.874352 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_msis_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_msis_ubc.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.467203 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_snoe.mod cmake/atm/CMakeFiles/atm.dir/mo_snoe.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.601465 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_import_export.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o built in 1.549642 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_instmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_instmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_comp.mod cmake/atm/CMakeFiles/atm.dir/dyn_comp.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 2.268265 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.705209 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.325721 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpftfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpftfilemod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o built in 0.281059 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o built in 0.881984 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o built in 0.354436 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pdepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/pdepstreammod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cld_sediment.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/gravity_waves_sources.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o built in 1.875833 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_import_export.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.245435 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o built in 0.485825 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/module_perturb.mod cmake/atm/CMakeFiles/atm.dir/module_perturb.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.502803 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o built in 1.025306 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/satellitephenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/satellitephenologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o built in 0.392001 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_model.mod cmake/atm/CMakeFiles/atm.dir/dust_model.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o built in 0.751927 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/boundarydata.mod cmake/atm/CMakeFiles/atm.dir/boundarydata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/majorsp_diffusion.mod cmake/atm/CMakeFiles/atm.dir/majorsp_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/restfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_scream.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_scream.mod.stamp GNU [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.866632 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rayleigh_friction.mod cmake/atm/CMakeFiles/atm.dir/rayleigh_friction.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 1.339230 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cld_sediment.mod cmake/atm/CMakeFiles/atm.dir/pkg_cld_sediment.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gravity_waves_sources.mod cmake/atm/CMakeFiles/atm.dir/gravity_waves_sources.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o.provides.build [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_gmean.mod cmake/atm/CMakeFiles/atm.dir/phys_gmean.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/physics_buffer.F90 -o CMakeFiles/atm.dir/physics_buffer.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 1.393504 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelvsfmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelvsfmmod.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 3.640177 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 3.145583 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soiltemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/soiltemperaturemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o built in 0.650528 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/init_hydrology.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o built in 0.260543 seconds [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o built in 0.429988 seconds [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemDynMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 3.905851 seconds [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o built in 1.975801 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnecosystemdynbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnecosystemdynbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_surfvals.mod cmake/atm/CMakeFiles/atm.dir/chem_surfvals.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 3.927409 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.287763 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.778552 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o built in 2.577391 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystemdynmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystemdynmod.mod.stamp GNU [ 81%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.346610 seconds [ 81%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyNoDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.746372 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o.provides.build [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 0.964268 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.678896 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o.provides.build [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.304851 seconds [ 81%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.459086 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o built in 0.291852 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.249034 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologynodrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologynodrainagemod.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 1.074461 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.298828 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.253879 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.518425 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/short_lived_species.mod cmake/atm/CMakeFiles/atm.dir/short_lived_species.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/read_volc_radiation_data.mod cmake/atm/CMakeFiles/atm.dir/read_volc_radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radheat.mod cmake/atm/CMakeFiles/atm.dir/radheat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/qbo.mod cmake/atm/CMakeFiles/atm.dir/qbo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/clybry_fam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.406154 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.466685 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_rename.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_rename.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clybry_fam.mod cmake/atm/CMakeFiles/atm.dir/clybry_fam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 2.365296 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 4.833476 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.513150 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o built in 0.649444 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o built in 0.657886 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/output_aerocom_aie.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.826926 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/cfc11star.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o built in 1.569511 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_apex.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 2.000140 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build [ 83%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o built in 0.405617 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airglow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o built in 0.642565 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airplane.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o built in 0.518114 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o built in 0.334428 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.478616 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.355156 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.353500 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 0.941654 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o built in 0.624843 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_neu_wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.416082 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o built in 0.585880 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/rate_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o built in 0.394138 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tropopause.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o built in 1.205754 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o built in 1.151668 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/slingo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o built in 0.695496 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.404780 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.502039 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituent_burden.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 3.686188 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o built in 0.320218 seconds [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o built in 0.500317 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.424667 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.223194 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o built in 0.366362 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_esmf.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_esmf.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/conv_water.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o built in 0.539933 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.519646 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o.provides.build [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o built in 0.421206 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.415358 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/sslt_rebin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o built in 0.438259 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o built in 1.922365 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_mct.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_mct.mod.stamp GNU [ 85%] Linking CXX static library liblnd.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /usr/bin/cmake -P CMakeFiles/lnd.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /usr/bin/cmake -E cmake_link_script CMakeFiles/lnd.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc liblnd.a CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o CMakeFiles/lnd.dir/ncdio_pio.F90.o CMakeFiles/lnd.dir/dynVarMod.F90.o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o CMakeFiles/lnd.dir/restUtilMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o built in 0.459201 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o Target liblnd.a built in 0.193465 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib liblnd.a Target liblnd.a built in 0.188728 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 85%] Built target lnd [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 1.636392 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.360729 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o.provides.build [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/forecast.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o built in 0.417351 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sox_cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/sox_cldaero_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_cycle.mod cmake/atm/CMakeFiles/atm.dir/co2_cycle.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_constituents.mod cmake/atm/CMakeFiles/atm.dir/rad_constituents.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_gasaerexch.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_gasaerexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_newnuc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_newnuc.mod.stamp GNU [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_calcsize.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o built in 0.419337 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_aerocom_aie.mod cmake/atm/CMakeFiles/atm.dir/output_aerocom_aie.mod.stamp GNU [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_wateruptake.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o built in 1.008932 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cfc11star.mod cmake/atm/CMakeFiles/atm.dir/cfc11star.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_apex.mod cmake/atm/CMakeFiles/atm.dir/mo_apex.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airglow.mod cmake/atm/CMakeFiles/atm.dir/mo_airglow.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airplane.mod cmake/atm/CMakeFiles/atm.dir/mo_airplane.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_cph.mod cmake/atm/CMakeFiles/atm.dir/mo_cph.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_exp_sol.mod cmake/atm/CMakeFiles/atm.dir/mo_exp_sol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aero_settling.mod cmake/atm/CMakeFiles/atm.dir/mo_aero_settling.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jeuv.mod cmake/atm/CMakeFiles/atm.dir/mo_jeuv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ghg_chem.mod cmake/atm/CMakeFiles/atm.dir/mo_ghg_chem.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o built in 1.353637 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_imp_sol.mod cmake/atm/CMakeFiles/atm.dir/mo_imp_sol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_neu_wetdep.mod cmake/atm/CMakeFiles/atm.dir/mo_neu_wetdep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rate_diags.mod cmake/atm/CMakeFiles/atm.dir/rate_diags.mod.stamp GNU [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tropopause.mod cmake/atm/CMakeFiles/atm.dir/tropopause.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_solarproton.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.333628 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o built in 3.069292 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ebert_curry.mod cmake/atm/CMakeFiles/atm.dir/ebert_curry.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/slingo.mod cmake/atm/CMakeFiles/atm.dir/slingo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aoa_tracers.mod cmake/atm/CMakeFiles/atm.dir/aoa_tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_ozone_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_ozone_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituent_burden.mod cmake/atm/CMakeFiles/atm.dir/constituent_burden.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tidal_diag.mod cmake/atm/CMakeFiles/atm.dir/tidal_diag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_fraction.mod cmake/atm/CMakeFiles/atm.dir/cloud_fraction.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.532607 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_cover_diags.mod cmake/atm/CMakeFiles/atm.dir/cloud_cover_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/conv_water.mod cmake/atm/CMakeFiles/atm.dir/conv_water.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_update_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_update_mod.mod.stamp GNU [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.477719 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.448642 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nudging.mod cmake/atm/CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_rebin.mod cmake/atm/CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers.mod cmake/atm/CMakeFiles/atm.dir/tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_defaults.mod cmake/atm/CMakeFiles/atm.dir/history_defaults.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_scam.mod cmake/atm/CMakeFiles/atm.dir/history_scam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 1.220724 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o.provides.build [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 1.998389 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.958331 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_coag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 1.348623 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.651767 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_wateruptake.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_wateruptake.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o.provides.build [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o built in 1.196280 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built in 1.234206 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solarproton.mod cmake/atm/CMakeFiles/atm.dir/mo_solarproton.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o built in 2.544532 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/exbdrift.mod cmake/atm/CMakeFiles/atm.dir/exbdrift.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.543606 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o built in 1.157238 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldfrc2m.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o built in 0.411816 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv.mod cmake/atm/CMakeFiles/atm.dir/zm_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc_cam.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc_cam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop_bam.mod cmake/atm/CMakeFiles/atm.dir/ndrop_bam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice_cam.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setsox.mod cmake/atm/CMakeFiles/atm.dir/mo_setsox.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/camsrfexch.mod cmake/atm/CMakeFiles/atm.dir/camsrfexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_data.mod cmake/atm/CMakeFiles/atm.dir/tracer_data.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_drydep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o built in 0.461878 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 1.260766 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.574264 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.957006 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 11.494717 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.433895 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.702288 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_rates.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_rates.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.632433 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.561340 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.447983 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 2.269437 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.614192 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.449303 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.654079 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.652171 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aer_opt.mod cmake/atm/CMakeFiles/atm.dir/modal_aer_opt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.573258 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 1.158508 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.362437 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.657865 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.534344 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o built in 0.535076 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.417059 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 1.203429 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o built in 0.870012 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o built in 0.576087 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o built in 1.409741 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iop_surf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_deposition.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o built in 0.970216 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_drydep.mod cmake/atm/CMakeFiles/atm.dir/mo_drydep.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o built in 0.306140 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_convproc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o built in 0.371611 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/seasalt_model.mod cmake/atm/CMakeFiles/atm.dir/seasalt_model.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/linoz_data.mod cmake/atm/CMakeFiles/atm.dir/linoz_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_cnst.mod cmake/atm/CMakeFiles/atm.dir/tracer_cnst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_extfrc.mod cmake/atm/CMakeFiles/atm.dir/mo_extfrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lightning.mod cmake/atm/CMakeFiles/atm.dir/mo_lightning.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o built in 0.751516 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 3.590610 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_srf_emissions.mod cmake/atm/CMakeFiles/atm.dir/mo_srf_emissions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tgcm_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_tgcm_ubc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aer_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.630535 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/cloud_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o built in 2.165105 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cospsimulator_intr.mod cmake/atm/CMakeFiles/atm.dir/cospsimulator_intr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation_data.mod cmake/atm/CMakeFiles/atm.dir/radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_state.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/check_energy.mod cmake/atm/CMakeFiles/atm.dir/check_energy.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug.mod cmake/atm/CMakeFiles/atm.dir/phys_debug.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat2m_macro.mod cmake/atm/CMakeFiles/atm.dir/cldwat2m_macro.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o built in 2.133915 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv_intr.mod cmake/atm/CMakeFiles/atm.dir/zm_conv_intr.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_shallow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/flux_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o built in 0.756415 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_drag.mod cmake/atm/CMakeFiles/atm.dir/gw_drag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_aero.mod cmake/atm/CMakeFiles/atm.dir/microp_aero.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o built in 0.921207 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_import_export.mod cmake/atm/CMakeFiles/atm.dir/atm_import_export.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o built in 0.407712 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_amicphys.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_amicphys.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.347820 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.460113 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.816933 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 1.197965 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.381895 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_rad_props.mod cmake/atm/CMakeFiles/atm.dir/cloud_rad_props.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radlw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o built in 0.501493 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hb_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o built in 0.436130 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_shallow.mod cmake/atm/CMakeFiles/atm.dir/convect_shallow.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.723959 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.441444 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/stratiform.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aerodep_flx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o built in 0.559430 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chlorine_loading_data.mod cmake/atm/CMakeFiles/atm.dir/chlorine_loading_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photoin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o built in 0.403196 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setext.mod cmake/atm/CMakeFiles/atm.dir/mo_setext.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/upper_bc.mod cmake/atm/CMakeFiles/atm.dir/upper_bc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radlw.mod cmake/atm/CMakeFiles/atm.dir/radlw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hb_diff.mod cmake/atm/CMakeFiles/atm.dir/hb_diff.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o built in 1.551683 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/macrop_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_deep.mod cmake/atm/CMakeFiles/atm.dir/convect_deep.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o built in 0.624895 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/stepon.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 1.238234 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aerodep_flx.mod cmake/atm/CMakeFiles/atm.dir/aerodep_flx.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o built in 0.614834 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.777742 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radsw.mod cmake/atm/CMakeFiles/atm.dir/radsw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/molec_diff.mod cmake/atm/CMakeFiles/atm.dir/molec_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stepon.mod cmake/atm/CMakeFiles/atm.dir/stepon.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o built in 0.349865 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.518214 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 1.384491 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.820790 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/llnl_o1d_to_2oh_adj.mod cmake/atm/CMakeFiles/atm.dir/llnl_o1d_to_2oh_adj.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/aero_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o built in 1.216666 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photo.mod cmake/atm/CMakeFiles/atm.dir/mo_photo.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o built in 1.537771 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation.mod cmake/atm/CMakeFiles/atm.dir/radiation.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 1.468740 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:83:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:84:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:45:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:44:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:43:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:42:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.462468 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 2.892325 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_usrrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o built in 1.775611 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o built in 1.510676 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_gas_phase_chemdr.mod cmake/atm/CMakeFiles/atm.dir/mo_gas_phase_chemdr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waccm_hrates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o built in 0.797240 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waccm_hrates.mod cmake/atm/CMakeFiles/atm.dir/mo_waccm_hrates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.527193 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o built in 7.796103 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_intr.mod cmake/atm/CMakeFiles/atm.dir/clubb_intr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 1.054305 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o built in 1.394764 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cam_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 2.812100 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.546295 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_interface.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o built in 1.318449 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_physics.mod cmake/atm/CMakeFiles/atm.dir/restart_physics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o built in 5.463856 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_interface.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_interface.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o built in 7.375909 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.293763 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inidat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o built in 0.805830 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inidat.mod cmake/atm/CMakeFiles/atm.dir/inidat.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/startup_initialconds.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o built in 0.347673 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/startup_initialconds.mod cmake/atm/CMakeFiles/atm.dir/startup_initialconds.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o built in 2.558086 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physpkg.mod cmake/atm/CMakeFiles/atm.dir/physpkg.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/restart_dynamics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inital.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o built in 0.330408 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inital.mod cmake/atm/CMakeFiles/atm.dir/inital.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o built in 0.707528 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_dynamics.mod cmake/atm/CMakeFiles/atm.dir/restart_dynamics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o built in 0.447824 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_restart.mod cmake/atm/CMakeFiles/atm.dir/cam_restart.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/runtime_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o built in 0.551218 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_comp.mod cmake/atm/CMakeFiles/atm.dir/cam_comp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o built in 0.786369 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/runtime_opts.mod cmake/atm/CMakeFiles/atm.dir/runtime_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_mct.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o built in 0.638855 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_mct.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o.provides.build [ 98%] Linking CXX static library libatm.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /usr/bin/cmake -P CMakeFiles/atm.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /usr/bin/cmake -E cmake_link_script CMakeFiles/atm.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libatm.a CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o CMakeFiles/atm.dir/physics_buffer.F90.o CMakeFiles/atm.dir/subcol_utils.F90.o CMakeFiles/atm.dir/buffer.F90.o Target libatm.a built in 0.177507 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libatm.a Target libatm.a built in 0.182537 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 98%] Built target atm make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl/CMakeFiles/e3sm.exe.dir/DependInfo.cmake --color= Scanning dependencies of target e3sm.exe make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o built in 0.157457 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/t_drv_timers_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/t_drv_timers_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o built in 0.205522 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.160107 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.664167 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.528458 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.306125 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 1.310721 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 1.112317 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.374168 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.260238 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.554042 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.961894 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o built in 0.385836 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.898546 seconds /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_atm_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_atm_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o built in 0.425880 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cplcomp_exchange_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cplcomp_exchange_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o built in 0.264826 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o.provides.build [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o built in 0.224187 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_iac_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_iac_mod.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o built in 0.759661 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_glc_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o.provides.build [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.520557 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 1.066382 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.240986 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.566069 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.706903 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90:39:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o built in 0.639055 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_rest_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_rest_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o built in 0.524081 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o built in 1.193459 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_hist_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_hist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o built in 1.772392 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cime_comp_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cime_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o built in 0.165306 seconds [100%] Linking Fortran executable /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && /usr/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -Wl,-rpath,/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.8.0-gfortran/lib CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o -o /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe -L/usr/lib/gcc/x86_64-linux-gnu/10 ../atm/libatm.a ../lnd/liblnd.a ../ice/libice.a ../ocn/libocn.a ../rof/librof.a ../glc/libglc.a ../wav/libwav.a ../iac/libiac.a ../esp/libesp.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib/libcsm_share.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe built in 1.358167 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/CMakeFiles 0 real 261.37 user 767.72 sys 201.98 [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*.gz' gzip: projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*.gz: No such file or directory [Pipeline] echo Not all logs were made for BOMEX. [Pipeline] sh + gzip -d projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.221014-095418.gz + cat projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.221014-095418 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts" -DCASETOOLS="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build" -DINCROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lib/include" -DLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys default -scam -nlev 72 -clubb_sgs -nadv 29 -rad rrtmg -chem trop_mam3 -silent -nlev 72 -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld real 1.62 user 0.97 sys 0.65 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/CMakeFiles /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 0%] Generating buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/buffer.F90 Scanning dependencies of target ocn make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 0%] Generating restUtilMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/restUtilMod.F90 [ 0%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o [ 0%] Generating physics_buffer.F90 Scanning dependencies of target ice cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/physics_buffer.F90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 0%] Generating ncdio_pio.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/ncdio_pio.F90 [ 0%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o [ 0%] Generating subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= [ 0%] Generating dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarMod.F90 [ 0%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 [ 0%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.146980 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.201722 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.205538 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build Scanning dependencies of target atm [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.145824 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.237092 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.248744 seconds Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.135766 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.676270 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90:25:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o built in 0.218571 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/landunit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o [ 2%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o built in 0.147369 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_fileunits.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o built in 0.275747 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffixed-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/mpishorthand.F -o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o built in 0.255859 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o built in 0.166380 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o built in 0.290303 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/ocn_comp_mct.mod cmake/ocn/CMakeFiles/ocn.dir/ocn_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library libocn.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && /usr/bin/cmake -P CMakeFiles/ocn.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && /usr/bin/cmake -E cmake_link_script CMakeFiles/ocn.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libocn.a CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o Target libocn.a built in 0.007146 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libocn.a Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o built in 0.140148 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o built in 0.279937 seconds Target libocn.a built in 0.003784 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_communicate.mod cmake/ice/CMakeFiles/ice.dir/ice_communicate.mod.stamp GNU /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o.provides.build [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/namelist_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_constants.mod cmake/ice/CMakeFiles/ice.dir/ice_constants.mod.stamp GNU make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain_size.mod cmake/ice/CMakeFiles/ice.dir/ice_domain_size.mod.stamp GNU [ 2%] Built target ocn /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fileunits.mod cmake/ice/CMakeFiles/ice.dir/ice_fileunits.mod.stamp GNU make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof/CMakeFiles/rof.dir/DependInfo.cmake --color= Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o built in 0.228988 seconds Scanning dependencies of target rof make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_broadcast.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o [ 2%] Building Fortran object cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/rof/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.srof -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90 -o CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o Target CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o built in 0.177900 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/rof/rof_comp_mct.mod cmake/rof/CMakeFiles/rof.dir/rof_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library librof.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof && /usr/bin/cmake -P CMakeFiles/rof.dir/cmake_clean_target.cmake Target CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o built in 0.292602 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof && /usr/bin/cmake -E cmake_link_script CMakeFiles/rof.dir/link.txt --verbose=1 Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o built in 0.234445 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc librof.a CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o Target librof.a built in 0.004211 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib librof.a Target librof.a built in 0.004444 seconds /usr/bin/cmake -E touch cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o built in 0.356949 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_scam.mod cmake/ice/CMakeFiles/ice.dir/ice_scam.mod.stamp GNU [ 2%] Built target rof make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o Scanning dependencies of target glc make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 2%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.259570 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o built in 0.235514 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/infnan.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.147577 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU [ 3%] Linking CXX static library libglc.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.257829 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o.provides.build Target libglc.a built in 0.002934 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o.provides.build Target libglc.a built in 0.004339 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o.provides.build /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_exit.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o [ 3%] Built target glc /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_broadcast.mod cmake/ice/CMakeFiles/ice.dir/ice_broadcast.mod.stamp GNU make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o built in 0.227315 seconds make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 3%] Building Fortran object cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/wav/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SpeciesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o built in 0.285408 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_instance.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o built in 0.158727 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_atmo.mod cmake/ice/CMakeFiles/ice.dir/ice_atmo.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU Target CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o built in 0.156775 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/wav/wav_comp_mct.mod cmake/wav/CMakeFiles/wav.dir/wav_comp_mct.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_calendar.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o [ 4%] Linking CXX static library libwav.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav && /usr/bin/cmake -P CMakeFiles/wav.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav && /usr/bin/cmake -E cmake_link_script CMakeFiles/wav.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libwav.a CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.246831 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varsur.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o Target libwav.a built in 0.004341 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libwav.a Target libwav.a built in 0.004222 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o built in 0.297242 seconds /usr/bin/cmake -E touch cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o [ 4%] Built target wav [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.204482 seconds [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_blocks.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o built in 0.218298 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.280869 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.264150 seconds [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/string_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.292251 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o built in 0.232053 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNBeTRIndicatorMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.335664 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o built in 0.261235 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/params_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/ll_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.246269 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.484849 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_spacecurve.mod cmake/ice/CMakeFiles/ice.dir/ice_spacecurve.mod.stamp GNU [ 5%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.279974 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o built in 0.230846 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o built in 0.150787 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o.provides.build [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o built in 0.299618 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o [ 5%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability_tools.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.170171 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.234547 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.231193 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sort_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o [ 5%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.278735 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o built in 0.242785 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.272208 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.287321 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.214224 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.265593 seconds [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_varorb.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o built in 0.249188 seconds [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/chem_mods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o built in 0.236043 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.221344 seconds [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o built in 0.232203 seconds make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 6%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.siac -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90 -o CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.201087 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o built in 1.123964 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_distribution.mod cmake/ice/CMakeFiles/ice.dir/ice_distribution.mod.stamp GNU [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o [ 7%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.163198 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.323767 seconds [ 7%] Linking CXX static library libiac.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/cam_cpl_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac && /usr/bin/cmake -E cmake_link_script CMakeFiles/iac.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libiac.a CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target libiac.a built in 0.003605 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libiac.a /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90:32:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target libiac.a built in 0.004244 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o built in 0.217731 seconds [ 8%] Built target iac /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o.provides.build [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o built in 0.368582 seconds Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.483088 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o built in 0.232204 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_global_reductions.mod cmake/ice/CMakeFiles/ice.dir/ice_global_reductions.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/srf_field_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o built in 0.233265 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90:61:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.227022 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o built in 0.300982 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.287445 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.216687 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.207681 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/error_function.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o built in 0.250695 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.212347 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_methods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o built in 0.216071 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.285313 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.201403 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.296316 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.215806 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.235504 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o built in 0.274341 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o built in 0.258584 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.204457 seconds make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp/CMakeFiles/esp.dir/DependInfo.cmake --color= Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.217821 seconds Scanning dependencies of target esp make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o [ 12%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.300565 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.133092 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU [ 13%] Linking CXX static library libesp.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.218279 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o Target libesp.a built in 0.004774 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target libesp.a built in 0.003030 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 13%] Built target esp Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.233431 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/m_sad_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.224302 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.225971 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.256193 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.285071 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.202328 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.223730 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 2.792317 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o built in 0.292003 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.207570 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.255798 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.454966 seconds [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_gather_scatter.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.221030 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o built in 0.278339 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.177793 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.213637 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.196813 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.390198 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o built in 0.221536 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.221586 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.873686 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.260069 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.271665 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o built in 0.225320 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.177595 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.225090 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_pio.mod cmake/ice/CMakeFiles/ice.dir/ice_pio.mod.stamp GNU [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o built in 0.262642 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.184130 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.227511 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.326907 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.642258 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.207726 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.263373 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.211325 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.286941 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.290688 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o built in 0.222241 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o built in 0.573530 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.262042 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.286231 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_read_write.mod cmake/ice/CMakeFiles/ice.dir/ice_read_write.mod.stamp GNU [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.220965 seconds [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.223743 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o built in 0.261844 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.282365 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.204880 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o built in 0.258633 seconds [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.273625 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.675725 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.218581 seconds [ 20%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.226489 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.273556 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.225259 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.207401 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.421189 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.261966 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o [ 20%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.277919 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.220429 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.214367 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.267021 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.275656 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.207312 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.208772 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.267623 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.273363 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.196579 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o built in 0.919753 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_grid.mod cmake/ice/CMakeFiles/ice.dir/ice_grid.mod.stamp GNU [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.210708 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.267524 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.276166 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.234525 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.241307 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.280318 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.286487 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.219763 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.238896 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.832352 seconds [ 23%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.296233 seconds [ 23%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.269514 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.205415 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.213741 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.211328 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.210584 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o built in 0.262684 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.196986 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.248411 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.248091 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.208752 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.231933 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.251870 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.261052 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.204015 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.225030 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o built in 0.245003 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.279962 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o built in 0.232863 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varctl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_ocean.mod cmake/ice/CMakeFiles/ice.dir/ice_ocean.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/error_code.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.746184 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o built in 0.227400 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/landunit_varcon.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.246172 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesconstantsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesconstantsmod.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/model_flags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o built in 0.293764 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.250355 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.381597 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.191277 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_kind_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_kind_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/speciesmod.mod cmake/lnd/CMakeFiles/lnd.dir/speciesmod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.435400 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varsur.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varsur.mod.stamp GNU [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.282596 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o built in 0.280704 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_remap.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_remap.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvemod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_prescribed_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_prescribed_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o built in 0.318526 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_nlutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_nlutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnbetrindicatormod.mod cmake/lnd/CMakeFiles/lnd.dir/cnbetrindicatormod.mod.stamp GNU [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_names.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mt95.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o built in 1.020621 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o built in 0.258909 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_decompmod.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o built in 0.288428 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.210186 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pbl_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.566358 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.244231 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o built in 0.270529 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/trb_mtn_stress.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o built in 0.833411 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.230144 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o built in 0.378237 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restart.mod cmake/ice/CMakeFiles/ice.dir/ice_restart.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o built in 0.295195 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_vertical.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vdiff_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.245889 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_pftvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_pftvarcontype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o built in 0.312439 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o built in 0.392413 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o built in 0.283093 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o built in 0.360632 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/random_xgc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o built in 0.216834 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/topounit_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varorb.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varorb.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelconstants.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelconstants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_filter_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_filter_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_landunit_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_constants.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o built in 0.317752 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_bounds.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_bounds.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varcon.mod.stamp GNU [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/srchutil.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varctl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varpar.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/elm_cpl_indices.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o built in 1.163323 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_driver.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_driver.mod.stamp GNU [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o built in 0.299367 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_import_export.mod cmake/ice/CMakeFiles/ice.dir/ice_import_export.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ecuyer_random.mod cmake/atm/CMakeFiles/atm.dir/ecuyer_random.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o built in 0.303359 seconds Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.147871 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/code_timer_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_finalizeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_aerosol.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o built in 0.960280 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_age.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o built in 0.245750 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o built in 0.280661 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o.provides.build [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_netcdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o built in 0.269089 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_vertical.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_vertical.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelptmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelptmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/eoswatermod.mod cmake/lnd/CMakeFiles/lnd.dir/eoswatermod.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/marsaglia.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobconstants.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobconstants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobvsfm.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobvsfm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsvsfmtype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsvsfmtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/unstructuredgridtype.mod cmake/lnd/CMakeFiles/lnd.dir/unstructuredgridtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/conditiontype.mod cmake/lnd/CMakeFiles/lnd.dir/conditiontype.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o built in 0.550581 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/connectionsettype.mod cmake/lnd/CMakeFiles/lnd.dir/connectionsettype.mod.stamp GNU [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/couplingvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/couplingvariabletype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o built in 0.299293 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/governingequationbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/governingequationbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/meshtype.mod cmake/lnd/CMakeFiles/lnd.dir/meshtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/solvertype.mod cmake/lnd/CMakeFiles/lnd.dir/solvertype.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/quicksort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsbasepointertype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsbasepointertype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesswtype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesswtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesnowtype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesnowtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesoiltype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesoiltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobthermal.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobthermal.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermalauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermalauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermalauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermalauxtype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o built in 0.302033 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermaltype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermaltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturebaseauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturebaseauxtype.mod.stamp GNU [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesswauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesswauxmod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.221252 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesswauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesswauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesnowauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesnowauxmod.mod.stamp GNU [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesnowauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesnowauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/arraydimthree.mod cmake/lnd/CMakeFiles/lnd.dir/arraydimthree.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o built in 0.297484 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/xpavg_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.189320 seconds [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.247560 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_meltpond.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90:26:0: #include <mpif.h> ! mpi library include file Warning: extra tokens at end of #include directive Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o built in 0.259293 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_mesh_utils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_mesh_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_shr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_shr_log_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.293784 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o.provides.build [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.256017 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnrichardsodepressuretype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnrichardsodepressuretype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o.provides.build [ 26%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/porosityfunctionmod.mod cmake/lnd/CMakeFiles/lnd.dir/porosityfunctionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsmod.mod cmake/lnd/CMakeFiles/lnd.dir/richardsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/richardsodepressureauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/richardsodepressureauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureconnauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/richardsodepressureconnauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/saturationfunction.mod cmake/lnd/CMakeFiles/lnd.dir/saturationfunction.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.283272 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_esmf.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_esmf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsvsfmauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsvsfmauxtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_aerosol.mod cmake/ice/CMakeFiles/ice.dir/ice_aerosol.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_age.mod cmake/ice/CMakeFiles/ice.dir/ice_age.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_diagnostics.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.278740 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fy.mod cmake/ice/CMakeFiles/ice.dir/ice_fy.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o.provides.build [ 26%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_slmm.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o built in 0.216801 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/getdatetime.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.253954 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 0.917462 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_fields.mod cmake/ice/CMakeFiles/ice.dir/ice_history_fields.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_lvl.mod cmake/ice/CMakeFiles/ice.dir/ice_lvl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_meltpond.mod cmake/ice/CMakeFiles/ice.dir/ice_meltpond.mod.stamp GNU /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o built in 0.264381 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_history_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o built in 0.377721 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.427637 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.186510 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.237380 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o built in 0.395082 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.169194 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o built in 0.169412 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiodimensionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiodimensionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o built in 1.613203 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.232579 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.150236 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o.provides.build [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.137409 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.295878 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.259137 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.224988 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o built in 4.136011 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o built in 0.241915 seconds [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_restoring.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o built in 0.236004 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_const_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_const_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_utils.mod cmake/lnd/CMakeFiles/lnd.dir/betr_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/func_data_type_mod.mod cmake/lnd/CMakeFiles/lnd.dir/func_data_type_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/somstatevarupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/somstatevarupdatemod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o built in 0.252269 seconds [ 27%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_test.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o built in 0.204499 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o built in 0.170236 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/btridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/btridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurveclapphornberg1978mod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurveclapphornberg1978mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_cpl_indices.mod cmake/lnd/CMakeFiles/lnd.dir/elm_cpl_indices.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_finalizemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_finalizemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 1.664223 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o.provides.build [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landunittype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landunittype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o built in 0.849054 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varpar.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/datetime.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/domainmod.mod cmake/lnd/CMakeFiles/lnd.dir/domainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesglobals.mod cmake/lnd/CMakeFiles/lnd.dir/fatesglobals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtparametersmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtparametersmod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/column_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o built in 0.212398 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_infnan_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_infnan_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_abortutils.mod cmake/atm/CMakeFiles/atm.dir/cam_abortutils.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o built in 0.179469 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_log_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_logfile.mod cmake/atm/CMakeFiles/atm.dir/cam_logfile.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracer_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/tracer_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mpishorthand.mod cmake/atm/CMakeFiles/atm.dir/mpishorthand.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_utils.mod cmake/atm/CMakeFiles/atm.dir/namelist_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ppgrid.mod cmake/atm/CMakeFiles/atm.dir/ppgrid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxrecvtype.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/units.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o built in 0.193301 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxtype.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o built in 0.208930 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o built in 0.216924 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o built in 1.142876 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restoring.mod cmake/ice/CMakeFiles/ice.dir/ice_restoring.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_shortwave.mod cmake/ice/CMakeFiles/ice.dir/ice_shortwave.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.247922 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o.provides.build [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_init.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o built in 0.295863 seconds [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_RunMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.326125 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.164135 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o built in 0.208411 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbasetype.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o built in 7.871877 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod cmake/atm/CMakeFiles/atm.dir/infnan.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_instance.mod cmake/atm/CMakeFiles/atm.dir/cam_instance.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dycore.mod cmake/atm/CMakeFiles/atm.dir/dycore.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o built in 0.211865 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatussimtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatussimtype.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o built in 1.034405 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o.provides.build [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o.provides.build [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o built in 0.343521 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o built in 0.255969 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o.provides.build [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_step_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o built in 0.627162 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/kinds.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o built in 1.654771 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/thread_mod.mod cmake/atm/CMakeFiles/atm.dir/thread_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_init.mod cmake/ice/CMakeFiles/ice.dir/ice_init.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/string_utils.mod cmake/atm/CMakeFiles/atm.dir/string_utils.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o built in 0.245245 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_nf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o built in 0.285727 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.410832 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_runmod.mod cmake/ice/CMakeFiles/ice.dir/cice_runmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/params_mod.mod cmake/atm/CMakeFiles/atm.dir/params_mod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o built in 0.490930 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o built in 1.029880 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ll_mod.mod cmake/atm/CMakeFiles/atm.dir/ll_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/domain_mod.mod cmake/atm/CMakeFiles/atm.dir/domain_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o built in 0.422088 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sort_mod.mod cmake/atm/CMakeFiles/atm.dir/sort_mod.mod.stamp GNU [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_InitMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_types.mod cmake/atm/CMakeFiles/atm.dir/m_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/geopotential.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pspect.mod cmake/atm/CMakeFiles/atm.dir/pspect.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_mods.mod cmake/atm/CMakeFiles/atm.dir/chem_mods.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTGenericMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o built in 0.231378 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/buffer.F90 -o CMakeFiles/atm.dir/buffer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o built in 0.318956 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/column_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/column_varcon.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radconstants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o built in 0.236963 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_sections.mod cmake/atm/CMakeFiles/atm.dir/sslt_sections.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o built in 0.632454 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_cpl_indices.mod cmake/atm/CMakeFiles/atm.dir/cam_cpl_indices.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiovariablekindmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiovariablekindmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srf_field_check.mod cmake/atm/CMakeFiles/atm.dir/srf_field_check.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o built in 0.280019 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_util.mod cmake/atm/CMakeFiles/atm.dir/mo_util.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o built in 0.291501 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_spc_id.mod cmake/atm/CMakeFiles/atm.dir/m_spc_id.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_function.mod cmake/atm/CMakeFiles/atm.dir/error_function.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_methods.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_methods.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusstaterecvtype.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o built in 1.389245 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_initmod.mod cmake/ice/CMakeFiles/ice.dir/cice_initmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o.provides.build [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o built in 0.494781 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/betr_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantnutkineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantnutkineticsmod.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o built in 0.341959 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_regression_module.mod cmake/lnd/CMakeFiles/lnd.dir/betr_regression_module.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o Target CMakeFiles/atm.dir/buffer.F90.o built in 1.726406 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o built in 0.245662 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o built in 0.327355 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o.provides.build [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o built in 0.275679 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/centuryecaouttype.mod cmake/lnd/CMakeFiles/lnd.dir/centuryecaouttype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o built in 0.330050 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_factor.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_factor.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varcon.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydrowtfmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydrowtfmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateslittermod.mod cmake/lnd/CMakeFiles/lnd.dir/fateslittermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesutilsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o built in 0.273784 seconds Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o built in 0.949334 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtgenericmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtgenericmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_mct.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o [ 29%] Linking CXX static library libice.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && /usr/bin/cmake -P CMakeFiles/ice.dir/cmake_clean_target.cmake [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_utilcd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && /usr/bin/cmake -E cmake_link_script CMakeFiles/ice.dir/link.txt --verbose=1 -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libice.a CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target libice.a built in 0.026212 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libice.a Target libice.a built in 0.026356 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 29%] Built target ice [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o built in 0.285530 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o built in 0.284974 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_inter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.371257 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_schu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.333917 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o built in 0.365180 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_zadj.mod cmake/atm/CMakeFiles/atm.dir/mo_zadj.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o built in 0.359674 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.650561 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_sad_data.mod cmake/atm/CMakeFiles/atm.dir/m_sad_data.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o built in 0.284261 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o built in 0.278045 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o built in 0.250976 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jpl.mod cmake/atm/CMakeFiles/atm.dir/mo_jpl.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spehox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_patchtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_patchtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rxt_rates_conv.mod cmake/atm/CMakeFiles/atm.dir/mo_rxt_rates_conv.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/QSatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o built in 0.268857 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o built in 0.241853 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sv_decomp.mod cmake/atm/CMakeFiles/atm.dir/sv_decomp.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_heatnirco2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_aerocondtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_aerocondtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_rxt_id.mod cmake/atm/CMakeFiles/atm.dir/m_rxt_id.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o built in 0.233049 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o built in 0.298120 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o.provides.build [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o built in 0.301498 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o built in 0.331093 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cmparray_mod.mod cmake/atm/CMakeFiles/atm.dir/cmparray_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o built in 0.338772 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbtpar.mod cmake/atm/CMakeFiles/atm.dir/hirsbtpar.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o built in 0.300596 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parrrsw.mod cmake/atm/CMakeFiles/atm.dir/parrrsw.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o built in 0.333874 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parrrtm.mod cmake/atm/CMakeFiles/atm.dir/parrrtm.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o built in 1.041265 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtlossfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtlossfluxesmod.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_random_numbers.mod cmake/atm/CMakeFiles/atm.dir/mcica_random_numbers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mersennetwister.mod cmake/atm/CMakeFiles/atm.dir/mersennetwister.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryvariabletype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_con.mod cmake/atm/CMakeFiles/atm.dir/rrlw_con.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrlw_vsn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartvariablemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartvariablemod.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrlw_cld.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeostatetype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeostatetype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o built in 0.418536 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg01.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg01.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_columntype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_columntype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg02.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg02.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg03.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg03.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/biogeocontype.mod cmake/lnd/CMakeFiles/lnd.dir/biogeocontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/qsatmod.mod cmake/lnd/CMakeFiles/lnd.dir/qsatmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg04.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg04.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg05.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg05.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg06.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg06.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg07.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg07.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg08.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg08.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg09.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg09.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg10.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg10.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg11.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg11.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columntype.mod cmake/lnd/CMakeFiles/lnd.dir/columntype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg12.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg12.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg13.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg13.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelltype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelltype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o built in 0.270912 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunittype.mod cmake/lnd/CMakeFiles/lnd.dir/landunittype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg14.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg14.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg15.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg15.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationtype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg16.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg16.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrlw_tbl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydraulicsmemmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydraulicsmemmod.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/ncdio_pio.F90 -o CMakeFiles/lnd.dir/ncdio_pio.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrlw_ref.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNDecompCascadeConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_sys_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_sys_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_con.mod cmake/atm/CMakeFiles/atm.dir/rrsw_con.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o built in 0.293875 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_vsn.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeCon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o built in 0.293972 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o built in 0.254928 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrsw_cld.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.265235 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PlantMicKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.289684 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o built in 0.350033 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o built in 0.387484 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o built in 0.271355 seconds Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 1.020114 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.285648 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o built in 0.246649 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.257587 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.290910 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.435312 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.272145 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.290170 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.272734 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.288581 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.271345 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.289252 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o built in 0.281579 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.263364 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.292965 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o built in 0.255182 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.276851 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 1.847771 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o.provides.build [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o built in 0.267674 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrsw_tbl.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o built in 0.276226 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrsw_ref.mod.stamp GNU [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/GetGlobalValuesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o built in 0.285746 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_vrtqdr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_vrtqdr.mod.stamp GNU [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o built in 0.279373 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_precision.mod cmake/atm/CMakeFiles/atm.dir/clubb_precision.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cndecompcascadecontype.mod cmake/lnd/CMakeFiles/lnd.dir/cndecompcascadecontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_code.mod cmake/atm/CMakeFiles/atm.dir/error_code.mod.stamp GNU [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o built in 0.312350 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_flags.mod cmake/atm/CMakeFiles/atm.dir/model_flags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameter_indices.mod cmake/atm/CMakeFiles/atm.dir/parameter_indices.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.343274 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakecon.mod cmake/lnd/CMakeFiles/lnd.dir/lakecon.mod.stamp GNU [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o built in 0.440426 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_interfaces.mod cmake/atm/CMakeFiles/atm.dir/lapack_interfaces.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/tridiagonalmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o built in 0.379877 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantmickineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantmickineticsmod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/endian.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/babortutils.mod cmake/lnd/CMakeFiles/lnd.dir/babortutils.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o built in 0.306885 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_bgctype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_bgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_names.mod cmake/atm/CMakeFiles/atm.dir/input_names.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_thtype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_thtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o built in 0.330333 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/daylengthmod.mod cmake/lnd/CMakeFiles/lnd.dir/daylengthmod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initVerticalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mt95.mod cmake/atm/CMakeFiles/atm.dir/mt95.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pbl_utils.mod cmake/atm/CMakeFiles/atm.dir/pbl_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncolumntemplatemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncolumntemplatemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpriorweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpriorweightsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/trb_mtn_stress.mod cmake/atm/CMakeFiles/atm.dir/trb_mtn_stress.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_utils.mod cmake/atm/CMakeFiles/atm.dir/gw_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynedmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vdiff_lu_solver.mod cmake/atm/CMakeFiles/atm.dir/vdiff_lu_solver.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_utils.mod cmake/atm/CMakeFiles/atm.dir/physics_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_5.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_data.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_data.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_arrays.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o built in 0.277929 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/math_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o built in 0.310310 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/parameters_silhs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o built in 0.286434 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/diffusion_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o built in 0.297136 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/random_xgc.mod cmake/atm/CMakeFiles/atm.dir/random_xgc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_timer_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_timer_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/gauaw_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o built in 0.966533 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/getglobalvaluesmod.mod cmake/lnd/CMakeFiles/lnd.dir/getglobalvaluesmod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/restUtilMod.F90 -o CMakeFiles/lnd.dir/restUtilMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o built in 0.316144 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edtypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edtypesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o built in 0.715381 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_assert_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_assert_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.535319 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srchutil.mod cmake/atm/CMakeFiles/atm.dir/srchutil.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_dataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o built in 0.283320 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/vrtmap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o built in 0.528542 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initverticalmod.mod cmake/lnd/CMakeFiles/lnd.dir/initverticalmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o built in 0.412091 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.367339 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/restutilmod.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] Target CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o built in 0.237429 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scyc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o built in 0.569892 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o built in 0.236161 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesallometrymod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesallometrymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o built in 0.872138 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o built in 0.397255 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o built in 0.328926 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_timemod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_timemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/code_timer_module.mod cmake/atm/CMakeFiles/atm.dir/code_timer_module.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_datatype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_datatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_string_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_string_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_netcdf.mod cmake/atm/CMakeFiles/atm.dir/output_netcdf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacetypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacetypesmod.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_time_manager.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o built in 0.436486 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.579812 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o built in 0.351329 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mathfuncmod.mod cmake/lnd/CMakeFiles/lnd.dir/mathfuncmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o built in 0.278014 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/soilorder_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o built in 0.403906 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o built in 1.203833 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanParamsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParametersInterface.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o built in 0.310022 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/paramUtilMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o built in 0.420639 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.362617 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o built in 0.300891 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.428869 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 1.173058 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.290971 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.229527 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.211241 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o built in 0.800617 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtracertype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtracertype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.251760 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.291873 seconds [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.301925 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/kineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/kineticsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.366046 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.347039 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o built in 0.225060 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o built in 0.469571 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o built in 0.460868 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o built in 0.483013 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o built in 0.226467 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o built in 0.313935 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 1.257116 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.227880 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/marsaglia.mod cmake/atm/CMakeFiles/atm.dir/marsaglia.mod.stamp GNU [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.356099 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MEGANFactorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o built in 0.234845 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quicksort.mod cmake/atm/CMakeFiles/atm.dir/quicksort.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.380491 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/sgexx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.276371 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.943887 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o built in 9.256866 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.221832 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.367565 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.323656 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initInterp.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o built in 0.258851 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BandDiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o built in 0.470330 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o.provides.build [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o built in 0.334926 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o built in 0.735175 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.244984 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o.provides.build [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 0.736219 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.226886 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.207471 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.744923 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 2.344934 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clm_time_manager.mod cmake/lnd/CMakeFiles/lnd.dir/clm_time_manager.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/bnddyi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.247999 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/pftvarcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounittype.mod cmake/lnd/CMakeFiles/lnd.dir/topounittype.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/AnnualFluxDribbler.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.297846 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4varcon.mod cmake/lnd/CMakeFiles/lnd.dir/ch4varcon.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.270900 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpatchstateupdatermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpatchstateupdatermod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/fft99.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o built in 0.313714 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationPropertiesType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o built in 0.428180 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilorder_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/soilorder_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/units.mod cmake/atm/CMakeFiles/atm.dir/units.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanparamstype.mod cmake/lnd/CMakeFiles/lnd.dir/urbanparamstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/drydep_mod.mod cmake/atm/CMakeFiles/atm.dir/drydep_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparametersinterface.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparametersinterface.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_messages.mod cmake/atm/CMakeFiles/atm.dir/error_messages.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/paramutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/paramutilmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_data.mod cmake/atm/CMakeFiles/atm.dir/interpolate_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/kinds.mod cmake/atm/CMakeFiles/atm.dir/kinds.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o built in 0.464345 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o built in 0.232863 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wrap_nf.mod cmake/atm/CMakeFiles/atm.dir/wrap_nf.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynTimeInfoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o built in 0.589829 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/time_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o built in 0.219485 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geopotential.mod cmake/atm/CMakeFiles/atm.dir/geopotential.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o built in 1.034761 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tracname.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o built in 0.248757 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edaccumulatefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edaccumulatefluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccarbonmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccarbonmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/buffer.mod cmake/atm/CMakeFiles/atm.dir/buffer.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radconstants.mod cmake/atm/CMakeFiles/atm.dir/radconstants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccnpmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccnpmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o built in 0.300816 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/checksbalancesmod.mod cmake/lnd/CMakeFiles/lnd.dir/checksbalancesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_indprd.mod cmake/atm/CMakeFiles/atm.dir/mo_indprd.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/funcpedotransfermod.mod cmake/lnd/CMakeFiles/lnd.dir/funcpedotransfermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/quadraticmod.mod cmake/lnd/CMakeFiles/lnd.dir/quadraticmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_prod_loss.mod cmake/atm/CMakeFiles/atm.dir/mo_prod_loss.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/organicfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/organicfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_adjrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_adjrxt.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/RootBiophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sharedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sharedparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lin_matrix.mod cmake/atm/CMakeFiles/atm.dir/mo_lin_matrix.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o built in 0.268432 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridcontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridcontrolmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_nln_matrix.mod cmake/atm/CMakeFiles/atm.dir/mo_nln_matrix.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_negtrc.mod cmake/atm/CMakeFiles/atm.dir/mo_negtrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpindextype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpindextype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_inter.mod cmake/atm/CMakeFiles/atm.dir/mo_inter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/findrootmod.mod cmake/lnd/CMakeFiles/lnd.dir/findrootmod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_schu.mod cmake/atm/CMakeFiles/atm.dir/mo_schu.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_calcoe.mod cmake/atm/CMakeFiles/atm.dir/mo_calcoe.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerboundarycondtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerboundarycondtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_phtadj.mod cmake/atm/CMakeFiles/atm.dir/mo_phtadj.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracercoefftype.mod cmake/lnd/CMakeFiles/lnd.dir/tracercoefftype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spehox.mod cmake/atm/CMakeFiles/atm.dir/spehox.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerstatetype.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o built in 0.264328 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_heatnirco2.mod cmake/atm/CMakeFiles/atm.dir/mo_heatnirco2.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/filterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o built in 0.314181 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetwatisomod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetwatisomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/interpolationmod.mod cmake/lnd/CMakeFiles/lnd.dir/interpolationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o built in 0.280155 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/bncdio_pio.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/chemstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/chemstatetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o.provides.build [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/SoilorderConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o built in 0.428784 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvefactorymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvefactorymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/meganfactorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/meganfactorsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lsparsematmod.mod cmake/lnd/CMakeFiles/lnd.dir/lsparsematmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o built in 0.313210 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o built in 0.285103 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdgathscatmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdgathscatmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_wvn.mod cmake/atm/CMakeFiles/atm.dir/rrlw_wvn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_wvn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_wvn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/domainlateralmod.mod cmake/lnd/CMakeFiles/lnd.dir/domainlateralmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncolumnstateupdatermod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncolumnstateupdatermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_aer.mod cmake/atm/CMakeFiles/atm.dir/rrsw_aer.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg16.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg16.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datadimensionmod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datadimensionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg17.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg17.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg18.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg18.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/initinterpmod.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initSubgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridRestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/banddiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/banddiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg19.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg19.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg20.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg20.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg21.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg21.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg22.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg22.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg23.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg23.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg24.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg24.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg25.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg25.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg26.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg26.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg27.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg27.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg28.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg28.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg29.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg29.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o.provides.build [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o built in 0.509783 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o built in 0.603656 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o built in 0.340890 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o.provides.build [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_nl_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_nl_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columnmod.mod cmake/lnd/CMakeFiles/lnd.dir/columnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitmod.mod cmake/lnd/CMakeFiles/lnd.dir/landunitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/patchmod.mod cmake/lnd/CMakeFiles/lnd.dir/patchmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.384748 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_reftra.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_reftra.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o.provides.build [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/accumulMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.392706 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridAveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o built in 0.394031 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/array_index.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o built in 0.201124 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/constants_clubb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o built in 0.690817 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationpropertiestype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationpropertiestype.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.203033 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o built in 1.068515 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtinitparamsfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtinitparamsfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_model.mod cmake/atm/CMakeFiles/atm.dir/parameters_model.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stat_file_module.mod cmake/atm/CMakeFiles/atm.dir/stat_file_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyntimeinfomod.mod cmake/lnd/CMakeFiles/lnd.dir/dyntimeinfomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/endian.mod cmake/atm/CMakeFiles/atm.dir/endian.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o built in 0.253352 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdutilsmod.mod.stamp GNU [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o built in 0.222575 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.266505 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpcompettype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpcompettype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_5.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_5.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o built in 0.309543 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.266888 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_arrays.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_arrays.mod.stamp GNU [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/filtermod.mod cmake/lnd/CMakeFiles/lnd.dir/filtermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/math_utilities.mod cmake/atm/CMakeFiles/atm.dir/math_utilities.mod.stamp GNU [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o built in 0.234447 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_silhs.mod cmake/atm/CMakeFiles/atm.dir/parameters_silhs.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o built in 0.287526 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbalancemod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbalancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilordercontype.mod cmake/lnd/CMakeFiles/lnd.dir/soilordercontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion_solver.mod cmake/atm/CMakeFiles/atm.dir/diffusion_solver.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ComputeSeedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o built in 0.244102 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gauaw_mod.mod cmake/atm/CMakeFiles/atm.dir/gauaw_mod.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o built in 0.273946 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o built in 0.892204 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.276145 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o built in 0.232676 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vrtmap_mod.mod cmake/atm/CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.298591 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 0.784297 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.245594 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.261064 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.241633 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scyc.mod cmake/atm/CMakeFiles/atm.dir/scyc.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.266426 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o built in 0.261187 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initsubgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/initsubgridmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o built in 0.326778 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o built in 0.295748 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o built in 0.431531 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o built in 0.719920 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o built in 0.579999 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/accumulmod.mod cmake/lnd/CMakeFiles/lnd.dir/accumulmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridavemod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridavemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessynchronizedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessynchronizedparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpforctype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpforctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/odemod.mod cmake/lnd/CMakeFiles/lnd.dir/odemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgcmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_pflotranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/transportmod.mod cmake/lnd/CMakeFiles/lnd.dir/transportmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.253339 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sgexx.mod cmake/atm/CMakeFiles/atm.dir/sgexx.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o built in 0.271209 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o built in 0.292778 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bhistfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/bhistfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/computeseedmod.mod cmake/lnd/CMakeFiles/lnd.dir/computeseedmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o built in 0.272238 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompinitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_datamod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o built in 0.306767 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDPftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 1.163680 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynfilemod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o built in 0.306332 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.274449 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o built in 12.324235 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o built in 2.446628 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o built in 0.517045 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_pflotranmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_pflotranmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_mod.mod cmake/atm/CMakeFiles/atm.dir/time_mod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90:53:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o built in 0.392369 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tracname.mod cmake/atm/CMakeFiles/atm.dir/mo_tracname.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/diocplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_setrxt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopeplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopeplantsoilbgctype.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o built in 0.592387 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/mockplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o built in 0.352647 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o built in 1.048949 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.710704 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/histfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/histfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarMod.F90 -o CMakeFiles/lnd.dir/dynVarMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.723167 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.262484 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o built in 0.707875 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o built in 0.311347 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o built in 0.350435 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.344935 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o built in 0.539167 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessizeagetypeindicesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessizeagetypeindicesmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o built in 0.846676 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o built in 1.974795 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_setcoef.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o built in 0.562668 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprmc.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/EnergyFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o built in 1.771263 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o built in 0.597243 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprop.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o built in 0.579434 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_taumol.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 7.982200 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/array_index.mod cmake/atm/CMakeFiles/atm.dir/array_index.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constants_clubb.mod cmake/atm/CMakeFiles/atm.dir/constants_clubb.mod.stamp GNU [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o built in 0.389108 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o built in 0.315856 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.319315 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o built in 0.637778 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.423653 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SolarAbsorbedType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.317968 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o built in 0.907794 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o built in 0.480886 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_roots.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.260141 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o built in 0.347906 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 0.746290 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o built in 0.601409 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.331345 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o built in 0.292533 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o built in 2.422370 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_tsdadg_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o built in 0.845260 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.844250 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sigma_sqd_w_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o built in 0.401040 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o built in 0.378005 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.326711 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calendar.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o built in 0.378484 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.314725 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.590961 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.410476 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.336758 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o built in 0.742319 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Nc_Ncn_eqns.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o built in 0.639866 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_diffusion.mod cmake/atm/CMakeFiles/atm.dir/gw_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpdecomptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpdecomptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionsmod.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o built in 0.407057 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgccnptype.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgccnptype.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/transform_to_pdf_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o built in 0.303956 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.330721 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsmod.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scream_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o built in 0.427531 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o built in 0.502675 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o built in 0.314383 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrn.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o.provides.build [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o built in 0.863380 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.940206 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o built in 0.775454 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_utils.mod cmake/atm/CMakeFiles/atm.dir/spmd_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sim_dat.mod cmake/atm/CMakeFiles/atm.dir/mo_sim_dat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_lw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_lw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_setcoef.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_taumol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_sw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_sw.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o built in 0.411323 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o built in 0.903111 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/interpolation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o built in 0.256050 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glcDiagnosticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o built in 0.305617 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 0.377583 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o built in 1.176551 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o built in 0.299259 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type.mod cmake/atm/CMakeFiles/atm.dir/stats_type.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datamod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o built in 0.401926 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/t_in_k_module.mod cmake/atm/CMakeFiles/atm.dir/t_in_k_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_wrap.mod cmake/atm/CMakeFiles/atm.dir/lapack_wrap.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/index_mapping.mod cmake/atm/CMakeFiles/atm.dir/index_mapping.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_parameter_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_parameter_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_semi_implicit.mod cmake/atm/CMakeFiles/atm.dir/clip_semi_implicit.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calc_roots.mod cmake/atm/CMakeFiles/atm.dir/calc_roots.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ly93_pdf.mod cmake/atm/CMakeFiles/atm.dir/ly93_pdf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o.provides.build [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.339517 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_tsdadg_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_tsdadg_pdf.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.423602 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_utilities.mod cmake/atm/CMakeFiles/atm.dir/pdf_utilities.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o built in 0.595666 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/CNStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o built in 1.151001 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sigma_sqd_w_module.mod cmake/atm/CMakeFiles/atm.dir/sigma_sqd_w_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calendar.mod cmake/atm/CMakeFiles/atm.dir/calendar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_operations.mod cmake/atm/CMakeFiles/atm.dir/matrix_operations.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hydromet_pdf_parameter_module.mod cmake/atm/CMakeFiles/atm.dir/hydromet_pdf_parameter_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diagnose_correlations_module.mod cmake/atm/CMakeFiles/atm.dir/diagnose_correlations_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nc_ncn_eqns.mod cmake/atm/CMakeFiles/atm.dir/nc_ncn_eqns.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o built in 11.623733 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/est_kessler_microphys_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o built in 0.981701 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o built in 0.350026 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/generate_uniform_sample_module.mod cmake/atm/CMakeFiles/atm.dir/generate_uniform_sample_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/transform_to_pdf_module.mod cmake/atm/CMakeFiles/atm.dir/transform_to_pdf_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scream_abortutils.mod cmake/atm/CMakeFiles/atm.dir/scream_abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o built in 1.859343 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o.provides.build [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvrt.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvrt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o.provides.build [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/physconst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 2.456222 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_control_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o built in 0.358039 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_paraminterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o built in 0.261711 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.864935 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o built in 0.348930 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ioFileMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o built in 0.271812 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvarmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvarmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusfluxtype.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o built in 0.593820 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplanthydraulicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplanthydraulicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvmc.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.748884 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparameterderivedmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparameterderivedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod cmake/atm/CMakeFiles/atm.dir/file_functions.mod.stamp GNU [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessoilbgcfluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessoilbgcfluxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolation.mod cmake/atm/CMakeFiles/atm.dir/interpolation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfmainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/saturation.mod cmake/atm/CMakeFiles/atm.dir/saturation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/energyfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/energyfluxtype.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.261425 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryinterfacemod.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o built in 0.424021 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitytype.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitytype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_tunable.mod cmake/atm/CMakeFiles/atm.dir/parameters_tunable.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesistype.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesistype.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o built in 2.744034 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/soilstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/solarabsorbedtype.mod cmake/lnd/CMakeFiles/lnd.dir/solarabsorbedtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfacealbedotype.mod cmake/lnd/CMakeFiles/lnd.dir/surfacealbedotype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/topounitdatatype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/waterfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/waterstatetype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o built in 0.310804 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakestatetype.mod cmake/lnd/CMakeFiles/lnd.dir/lakestatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_pdf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmtype.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologytype.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologytype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelldatatype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelldatatype.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_reader.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o built in 0.326117 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o built in 0.710544 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o built in 0.473626 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_common.mod cmake/atm/CMakeFiles/atm.dir/gw_common.mod.stamp GNU [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.449295 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/est_kessler_microphys_module.mod cmake/atm/CMakeFiles/atm.dir/est_kessler_microphys_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/diocbgcreactionstype.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_importance_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o built in 0.554976 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopebgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopebgcreactionstype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/mockbgcreactionstype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glcdiagnosticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/glcdiagnosticsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/landunitdatatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/sedfluxtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o built in 0.387497 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.194263 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod cmake/atm/CMakeFiles/atm.dir/physconst.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.242726 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_control_mod.mod cmake/atm/CMakeFiles/atm.dir/cam_control_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.179639 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_map_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_map_utils.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 2.795651 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.299637 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.219843 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o built in 0.312125 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physical_constants.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o built in 0.235967 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o built in 0.270475 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/glb_verif_smry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o built in 0.320210 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.278121 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_manager.mod cmake/atm/CMakeFiles/atm.dir/time_manager.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o built in 0.359517 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iofilemod.mod cmake/atm/CMakeFiles/atm.dir/iofilemod.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.544511 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/time_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.263151 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/filenames.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o built in 0.237557 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o built in 0.275770 seconds [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initGridCellsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o built in 0.305930 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.379705 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o built in 0.332818 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o built in 0.260309 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o built in 0.284602 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rad.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 3.429000 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.357958 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o.provides.build [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o built in 0.243543 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopystatetype.mod cmake/lnd/CMakeFiles/lnd.dir/canopystatetype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o built in 0.861818 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnstatetype.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/grid_class.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenfluxtype.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o built in 1.081409 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o built in 0.451035 seconds [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndtype.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_type_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clmfatesparaminterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/clmfatesparaminterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_variables.mod cmake/atm/CMakeFiles/atm.dir/stats_variables.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o built in 0.261466 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf_main.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o built in 1.098355 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o built in 0.273361 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_grads.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o built in 0.421530 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o built in 0.653829 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o built in 0.349373 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o built in 0.498419 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.315169 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edloggingmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/edloggingmortalitymod.mod.stamp GNU [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o built in 0.326311 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.360583 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o.provides.build [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 3.454052 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpnitdentype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpnitdentype.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.326432 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentsomtype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentsomtype.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o built in 0.334967 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitymod.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitymod.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o built in 1.413890 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_reader.mod cmake/atm/CMakeFiles/atm.dir/input_reader.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VerticalProfileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 1.177601 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/betrbgcmod.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o built in 0.581883 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o built in 1.687797 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o built in 0.608915 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glc2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.490202 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o built in 0.375892 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_oro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.389834 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynlandunitareamod.mod cmake/lnd/CMakeFiles/lnd.dir/dynlandunitareamod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o built in 0.316315 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/output_2D_samples_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeinterpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_importance_sample_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_importance_sample_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reweightmod.mod cmake/lnd/CMakeFiles/lnd.dir/reweightmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o.provides.build [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o built in 1.191177 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o.provides.build [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o built in 0.298852 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_exchange.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o built in 0.391055 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_filter_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_filter_exchange.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_landunit_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_exchange.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_exchangemod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tsinti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o built in 0.317645 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initgridcellsmod.mod cmake/lnd/CMakeFiles/lnd.dir/initgridcellsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o.provides.build [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o built in 0.303856 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_constants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o built in 0.472206 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_sediment_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o built in 0.289795 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o built in 0.369183 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/comsrf.mod cmake/atm/CMakeFiles/atm.dir/comsrf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituents.mod cmake/atm/CMakeFiles/atm.dir/constituents.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physical_constants.mod cmake/atm/CMakeFiles/atm.dir/physical_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/glb_verif_smry.mod cmake/atm/CMakeFiles/atm.dir/glb_verif_smry.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_utils.mod cmake/atm/CMakeFiles/atm.dir/time_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/filenames.mod cmake/atm/CMakeFiles/atm.dir/filenames.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_saturation.mod cmake/atm/CMakeFiles/atm.dir/wv_saturation.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/gas_wetdep_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_params.mod cmake/atm/CMakeFiles/atm.dir/mo_params.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/orbit.mod cmake/atm/CMakeFiles/atm.dir/orbit.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbt.mod cmake/atm/CMakeFiles/atm.dir/hirsbt.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_init.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_init.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_init.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_init.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o built in 0.468924 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_rad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/grid_class.mod cmake/atm/CMakeFiles/atm.dir/grid_class.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_pdf_main.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Skx_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o built in 0.292005 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_grads.mod cmake/atm/CMakeFiles/atm.dir/output_grads.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeuninterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeuninterpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_sfc_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_sfc_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_zt_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edbtranmod.mod cmake/lnd/CMakeFiles/lnd.dir/edbtranmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcohortdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edcohortdynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zt_module.mod.stamp GNU [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o built in 0.297184 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_sfc_module.mod cmake/atm/CMakeFiles/atm.dir/stats_sfc_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zt_module.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/corr_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o built in 0.365006 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/precipitation_fraction.mod cmake/atm/CMakeFiles/atm.dir/precipitation_fraction.mod.stamp GNU [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o built in 0.463722 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_convect.mod cmake/atm/CMakeFiles/atm.dir/gw_convect.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_front.mod cmake/atm/CMakeFiles/atm.dir/gw_front.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.916608 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_oro.mod cmake/atm/CMakeFiles/atm.dir/gw_oro.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacemod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_2d_samples_module.mod cmake/atm/CMakeFiles/atm.dir/output_2d_samples_module.mod.stamp GNU [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o built in 0.610103 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/lh_microphys_var_covar_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o built in 0.454397 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/verticalprofilemod.mod cmake/lnd/CMakeFiles/lnd.dir/verticalprofilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reactionsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/reactionsfactory.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o built in 0.283647 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o.provides.build [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.795724 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o.provides.build [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_constants.mod cmake/atm/CMakeFiles/atm.dir/mo_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.271378 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_control.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o built in 0.375081 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o built in 0.299467 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndmod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/quadrature_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gas_wetdep_opts.mod cmake/atm/CMakeFiles/atm.dir/gas_wetdep_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.456721 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.289546 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o built in 0.472520 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.262733 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.288116 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.309401 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.434000 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o built in 0.323676 seconds [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.311945 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.286092 seconds [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonstatetype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.288935 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmortalityfunctionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmortalityfunctionsmod.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_explicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.317907 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edphysiologymod.mod cmake/lnd/CMakeFiles/lnd.dir/edphysiologymod.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o built in 0.464322 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.660934 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.375101 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnptype.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.289583 seconds [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.359614 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelfatesmod.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o built in 0.310842 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.561946 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelstubmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelstubmod.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.386119 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.395174 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/numerical_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o built in 0.383524 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o built in 0.364028 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/skx_module.mod cmake/atm/CMakeFiles/atm.dir/skx_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/corr_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/corr_varnce_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc.mod.stamp GNU [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o built in 0.511576 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.787889 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lh_microphys_var_covar_module.mod cmake/atm/CMakeFiles/atm.dir/lh_microphys_var_covar_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o built in 0.865959 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o built in 0.341046 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_exchangemod.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dimensions_mod.mod cmake/atm/CMakeFiles/atm.dir/dimensions_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpatchdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edpatchdynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_control.mod cmake/atm/CMakeFiles/atm.dir/phys_control.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/element_state.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o built in 0.314927 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quadrature_mod.mod cmake/atm/CMakeFiles/atm.dir/quadrature_mod.mod.stamp GNU [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o built in 0.317882 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chem_utls.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o built in 0.238978 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airmas.mod cmake/atm/CMakeFiles/atm.dir/mo_airmas.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveall.mod cmake/atm/CMakeFiles/atm.dir/mo_waveall.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveo3.mod cmake/atm/CMakeFiles/atm.dir/mo_waveo3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ps2str.mod cmake/atm/CMakeFiles/atm.dir/mo_ps2str.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setair.mod cmake/atm/CMakeFiles/atm.dir/mo_setair.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setcld.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.289076 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lymana.mod cmake/atm/CMakeFiles/atm.dir/mo_lymana.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelen.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelen.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.842051 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInventoryInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o built in 15.580274 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columndatatype.mod cmake/lnd/CMakeFiles/lnd.dir/columndatatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcanopystructuremod.mod cmake/lnd/CMakeFiles/lnd.dir/edcanopystructuremod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o built in 0.295370 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 2.301507 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physics_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cldoptics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.339091 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_helper_module.mod cmake/atm/CMakeFiles/atm.dir/advance_helper_module.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o built in 0.273232 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o built in 0.303094 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_explicit.mod cmake/atm/CMakeFiles/atm.dir/clip_explicit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion.mod cmake/atm/CMakeFiles/atm.dir/diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mean_adv.mod cmake/atm/CMakeFiles/atm.dir/mean_adv.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o built in 0.735710 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sponge_layer_damping.mod cmake/atm/CMakeFiles/atm.dir/sponge_layer_damping.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/fill_holes.mod cmake/atm/CMakeFiles/atm.dir/fill_holes.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mono_flux_limiter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.334542 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pos_definite_module.mod cmake/atm/CMakeFiles/atm.dir/pos_definite_module.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.649956 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/turbulent_adv_pdf.mod cmake/atm/CMakeFiles/atm.dir/turbulent_adv_pdf.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.756331 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp3_module.mod.stamp GNU [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.523232 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calc_pressure.mod cmake/atm/CMakeFiles/atm.dir/calc_pressure.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o built in 0.716368 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/numerical_check.mod cmake/atm/CMakeFiles/atm.dir/numerical_check.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/adg1_adg2_3d_luhar_pdf.mod cmake/atm/CMakeFiles/atm.dir/adg1_adg2_3d_luhar_pdf.mod.stamp GNU [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.358747 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.282394 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.657569 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/setup_clubb_pdf_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o built in 0.279900 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o built in 0.335552 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o built in 1.362908 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o built in 0.342318 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o built in 0.548586 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 2.384349 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o.provides.build [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o built in 1.149460 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o built in 0.499630 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinventoryinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinventoryinitmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o built in 2.687651 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o built in 0.612037 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 0.964417 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.598849 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropharvestpoolsmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropharvestpoolsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionscentecacnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionscentecacnptype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceresistancemod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceresistancemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittverttranspmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittverttranspmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosolmod.mod cmake/lnd/CMakeFiles/lnd.dir/aerosolmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/drydepvelocity.mod cmake/lnd/CMakeFiles/lnd.dir/drydepvelocity.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dustmod.mod cmake/lnd/CMakeFiles/lnd.dir/dustmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/erosionmod.mod cmake/lnd/CMakeFiles/lnd.dir/erosionmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 1.410960 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o built in 0.269205 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/cldaero_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_common.mod cmake/atm/CMakeFiles/atm.dir/dust_common.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_exchangemod.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o built in 0.335222 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterbudgetmod.mod cmake/lnd/CMakeFiles/lnd.dir/waterbudgetmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_state.mod cmake/atm/CMakeFiles/atm.dir/element_state.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chem_utls.mod cmake/atm/CMakeFiles/atm.dir/mo_chem_utls.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanalbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanalbedomod.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.326914 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 4.999074 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.275748 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.461521 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edsurfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/edsurfaceradiationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplantrespphotosynthmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplantrespphotosynthmod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o built in 0.293371 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.519143 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_wp2_wp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o built in 0.730023 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mono_flux_limiter.mod cmake/atm/CMakeFiles/atm.dir/mono_flux_limiter.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o built in 1.355092 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mixing_length.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o built in 0.966347 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_closure_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o built in 3.351095 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sfc_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/sfc_varnce_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_clubb_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_clubb_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/edinitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/setup_clubb_pdf_params.mod cmake/atm/CMakeFiles/atm.dir/setup_clubb_pdf_params.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/applicationsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/applicationsfactory.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_0.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_utils.mod.stamp GNU [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o built in 3.351877 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o built in 0.441198 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_driver_module.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_driver_module.mod.stamp GNU [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 1.901255 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parallel_mod.mod cmake/atm/CMakeFiles/atm.dir/parallel_mod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/charge_neutrality.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o built in 0.253784 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mass_xforms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o built in 0.241205 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mean_mass.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 4.468872 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_xsections.mod cmake/atm/CMakeFiles/atm.dir/mo_xsections.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rtlink.mod cmake/atm/CMakeFiles/atm.dir/mo_rtlink.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/set_cp.mod cmake/atm/CMakeFiles/atm.dir/set_cp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o built in 0.256748 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xm_wpxp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mixing_length.mod cmake/atm/CMakeFiles/atm.dir/mixing_length.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_closure_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_closure_module.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o built in 2.208749 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.384933 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.293337 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.219253 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o built in 0.264904 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.223267 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod cmake/atm/CMakeFiles/atm.dir/charge_neutrality.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mass_xforms.mod cmake/atm/CMakeFiles/atm.dir/mo_mass_xforms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mean_mass.mod cmake/atm/CMakeFiles/atm.dir/mo_mean_mass.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.229601 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_api_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_api_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybrid_mod.mod cmake/atm/CMakeFiles/atm.dir/hybrid_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/control_mod.mod cmake/atm/CMakeFiles/atm.dir/control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.235881 seconds [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/reduction_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o built in 0.330738 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.325224 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.273762 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod cmake/atm/CMakeFiles/atm.dir/gridgraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybvcoord_mod.mod cmake/atm/CMakeFiles/atm.dir/hybvcoord_mod.mod.stamp GNU [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.324769 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.453679 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.211448 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.260494 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 5.325768 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.368857 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pmgrid.mod cmake/atm/CMakeFiles/atm.dir/pmgrid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_mod.mod cmake/atm/CMakeFiles/atm.dir/element_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 0.803494 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 16.931976 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.365932 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 1.200289 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.532268 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o built in 0.239165 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.391705 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.468164 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 1.336178 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.697219 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 1.158621 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.733759 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.901710 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o built in 0.414442 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.443566 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedtype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.516479 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o built in 0.327758 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GrowthRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o built in 0.441542 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.454884 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod_base.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod_base.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.646579 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eos.mod cmake/atm/CMakeFiles/atm.dir/eos.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o built in 0.481280 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rgrid.mod cmake/atm/CMakeFiles/atm.dir/rgrid.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.699541 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 0.983435 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.616001 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 13.915049 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 0.870207 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 0.814791 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg2_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 6.829524 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o built in 0.451872 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o built in 0.420078 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedtype_mod.mod cmake/atm/CMakeFiles/atm.dir/schedtype_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cube_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o built in 0.476523 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o built in 0.676311 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.312052 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/element_ops.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o built in 0.552831 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/temperaturetype.mod cmake/lnd/CMakeFiles/lnd.dir/temperaturetype.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedule_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o built in 1.182322 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynharvestmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynharvestmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/annualupdatemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_clubb_core_module.mod cmake/atm/CMakeFiles/atm.dir/advance_clubb_core_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/c14decaymod.mod cmake/lnd/CMakeFiles/lnd.dir/c14decaymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o built in 0.753268 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonisofluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonisofluxmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cngapmortalitybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cngapmortalitybetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate1betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate1betrmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.542767 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate2betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate2betrmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 1.759191 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edge_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cube_mod.mod cmake/atm/CMakeFiles/atm.dir/cube_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate3betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate3betrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o built in 0.534069 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_ops.mod cmake/atm/CMakeFiles/atm.dir/element_ops.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 0.811860 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.358950 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o built in 1.563567 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 0.892722 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.401943 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/imex_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o built in 1.092496 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedule_mod.mod cmake/atm/CMakeFiles/atm.dir/schedule_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 0.905321 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o built in 0.399343 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o built in 1.032354 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2glcMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o built in 3.755994 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build [ 73%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VOCEmissionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o built in 0.515639 seconds [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_derived_type_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o built in 0.617400 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/precisioncontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/precisioncontrolmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o built in 0.379081 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zoltan_mod.mod cmake/atm/CMakeFiles/atm.dir/zoltan_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o built in 0.296016 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scalable_grid_init_mod.mod cmake/atm/CMakeFiles/atm.dir/scalable_grid_init_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geometry_mod.mod cmake/atm/CMakeFiles/atm.dir/geometry_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/imex_mod.mod cmake/atm/CMakeFiles/atm.dir/imex_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o built in 0.397084 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystembalancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystembalancecheckmod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o built in 2.267854 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gapmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/gapmortalitymod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o built in 2.412619 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o built in 0.338905 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridadjustmentsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridadjustmentsmod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_pio_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/edge_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o built in 0.465412 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TotalWaterAndHeatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.270210 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.379676 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.404156 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/horizontal_interpolate.mod cmake/atm/CMakeFiles/atm.dir/horizontal_interpolate.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 0.681321 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/readinitial.mod cmake/atm/CMakeFiles/atm.dir/readinitial.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o built in 0.888512 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o built in 0.790379 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.451761 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mesh_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o built in 0.372558 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/se_single_column_mod.mod cmake/atm/CMakeFiles/atm.dir/se_single_column_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_pio_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_pio_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod.mod cmake/atm/CMakeFiles/atm.dir/edge_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.430424 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/mesh_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_solar_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 1.005387 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/solar_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 1.253035 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/input_data_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o built in 0.389654 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_prop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o built in 0.629768 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o built in 0.489547 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 0.540379 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 0.712418 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.375100 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o built in 0.793112 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.450095 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.460076 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_interfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o built in 1.295208 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.512949 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4mod.mod cmake/lnd/CMakeFiles/lnd.dir/ch4mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.227833 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilmoiststressmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilmoiststressmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyhydrologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrifDenitrifMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.196100 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o built in 0.856684 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/bndry_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 0.544375 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/interpolate_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.736665 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowsnicarmod.mod cmake/lnd/CMakeFiles/lnd.dir/snowsnicarmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solar_parms.mod cmake/atm/CMakeFiles/atm.dir/mo_solar_parms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/maintenancerespmod.mod cmake/lnd/CMakeFiles/lnd.dir/maintenancerespmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solar_data.mod cmake/atm/CMakeFiles/atm.dir/solar_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulation.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_data_utils.mod cmake/atm/CMakeFiles/atm.dir/input_data_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_prop.mod cmake/atm/CMakeFiles/atm.dir/phys_prop.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o built in 0.628051 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mag_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o built in 0.268435 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o built in 1.509615 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/euvac.mod cmake/atm/CMakeFiles/atm.dir/euvac.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o built in 0.565832 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_seto2.mod cmake/atm/CMakeFiles/atm.dir/mo_seto2.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/activelayermod.mod cmake/lnd/CMakeFiles/lnd.dir/activelayermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tuv_inti.mod cmake/atm/CMakeFiles/atm.dir/mo_tuv_inti.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o built in 0.661399 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spedata.mod cmake/atm/CMakeFiles/atm.dir/spedata.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_initfiles.mod cmake/atm/CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rad_solar_var.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o built in 2.925820 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_esmf.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/totalwaterandheatmod.mod cmake/lnd/CMakeFiles/lnd.dir/totalwaterandheatmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyninitcolumnsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dyninitcolumnsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_grid_support.mod cmake/atm/CMakeFiles/atm.dir/cam_grid_support.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o built in 1.323234 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod_base.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o built in 0.268906 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ncdio_atm.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.624039 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mag_parms.mod cmake/atm/CMakeFiles/atm.dir/mag_parms.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jshort.mod cmake/atm/CMakeFiles/atm.dir/mo_jshort.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/snowhydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jlong.mod cmake/atm/CMakeFiles/atm.dir/mo_jlong.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 0.720227 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/lakefluxesmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o built in 1.056696 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o built in 0.722830 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.326686 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.516203 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.281735 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/croptype.mod cmake/lnd/CMakeFiles/lnd.dir/croptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elmfatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/elmfatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 1.085083 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.234870 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 1.057750 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o built in 1.641848 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_theta.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o built in 0.780534 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o built in 0.333464 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_support.mod cmake/atm/CMakeFiles/atm.dir/cam_history_support.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o built in 0.444824 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dof_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 0.880447 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/global_norms_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o built in 0.462977 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o built in 0.595665 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 1.142385 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.397444 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o built in 0.727004 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceradiationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o built in 0.681394 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dof_mod.mod cmake/atm/CMakeFiles/atm.dir/dof_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/global_norms_mod.mod cmake/atm/CMakeFiles/atm.dir/global_norms_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_base.mod cmake/atm/CMakeFiles/atm.dir/viscosity_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hycoef.mod cmake/atm/CMakeFiles/atm.dir/hycoef.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cg_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.502565 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.424951 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 2.688938 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o built in 0.601723 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/pdelb0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o built in 0.777059 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.260610 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o built in 0.511772 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cg_mod.mod cmake/atm/CMakeFiles/atm.dir/cg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o built in 0.226728 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_si_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_si_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o built in 0.238026 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dyncropFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/solver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 2.126662 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/baregroundfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/baregroundfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakehydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/lakehydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/laketemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/laketemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AllocationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o built in 0.363288 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadebgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadebgcmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o built in 0.434187 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadecnmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadecnmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfacealbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/surfacealbedomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogendynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogendynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulationalm.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulationalm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologyfluxlimitmod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologyfluxlimitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegstructupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/vegstructupdatemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeophysmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncropfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncropfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.602250 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.425674 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 0.739368 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 0.947045 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 0.788489 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_state_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_state_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sl_advection.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 2.722381 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 2.522396 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o built in 0.996331 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advance_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sl_advection.mod cmake/atm/CMakeFiles/atm.dir/sl_advection.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advection_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o built in 0.339632 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o built in 5.442536 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/allocationmod.mod cmake/lnd/CMakeFiles/lnd.dir/allocationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o.provides.build [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 2.864300 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o built in 2.345545 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_implicit_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.197518 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o built in 0.555321 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_driver_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o built in 1.536754 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnallocationbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnallocationbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_grid.mod cmake/atm/CMakeFiles/atm.dir/dyn_grid.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 1.670421 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o built in 0.780209 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittdecompmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittdecompmod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ref_pres.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.414064 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/namelist_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o built in 0.341919 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.594803 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_util_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 3.353825 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_data_flux.mod cmake/atm/CMakeFiles/atm.dir/co2_data_flux.mod.stamp GNU [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o built in 1.915107 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o built in 0.501259 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ref_pres.mod cmake/atm/CMakeFiles/atm.dir/ref_pres.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 1.225207 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_mod.mod cmake/atm/CMakeFiles/atm.dir/namelist_mod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/prim_driver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 0.693880 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers_suite.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.292371 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radae.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o built in 0.364866 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/readparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/readparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopytemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/canopytemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod cmake/atm/CMakeFiles/atm.dir/phys_grid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o built in 2.630699 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.228980 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_funcsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_funcsmod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/debug_info.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o built in 2.439593 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyfluxesmod.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/controlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.265437 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.551399 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers_suite.mod cmake/atm/CMakeFiles/atm.dir/tracers_suite.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.340387 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.239589 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 1.724446 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 0.787687 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.739164 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.319355 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.313146 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.488619 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.310841 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.457388 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.532055 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.471580 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o built in 1.442259 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 1.035653 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_import_export.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o built in 1.621592 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/soil_erod_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o built in 1.006672 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/polar_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.623600 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_synoz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o built in 0.364618 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_instmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_instmod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sethet.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o built in 0.410412 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o built in 1.783461 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_msis_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o built in 0.383537 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpftfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpftfilemod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o built in 0.384411 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o built in 0.722022 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o built in 0.449810 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pdepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/pdepstreammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug_util.mod cmake/atm/CMakeFiles/atm.dir/phys_debug_util.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/restfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hk_conv.mod cmake/atm/CMakeFiles/atm.dir/hk_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_import_export.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_import_export.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/debug_info.mod cmake/atm/CMakeFiles/atm.dir/debug_info.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat.mod cmake/atm/CMakeFiles/atm.dir/cldwat.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o built in 0.971635 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radae.mod cmake/atm/CMakeFiles/atm.dir/radae.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.222829 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.425660 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/module_perturb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o built in 0.213001 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_types.mod cmake/atm/CMakeFiles/atm.dir/physics_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interp_mod.mod cmake/atm/CMakeFiles/atm.dir/interp_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sat_hist.mod cmake/atm/CMakeFiles/atm.dir/sat_hist.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/subcol_utils.F90 -o CMakeFiles/atm.dir/subcol_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o built in 1.148618 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/soil_erod_mod.mod cmake/atm/CMakeFiles/atm.dir/soil_erod_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/satellitephenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/satellitephenologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/polar_avg.mod cmake/atm/CMakeFiles/atm.dir/polar_avg.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o built in 0.650813 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/dust_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 1.196625 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelinterfacemod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/boundarydata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.310065 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sethet.mod cmake/atm/CMakeFiles/atm.dir/mo_sethet.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelvsfmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelvsfmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_msis_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_msis_ubc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_snoe.mod cmake/atm/CMakeFiles/atm.dir/mo_snoe.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_comp.mod cmake/atm/CMakeFiles/atm.dir/dyn_comp.mod.stamp GNU [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o built in 0.983503 seconds [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 2.063979 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.330697 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o built in 0.336349 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 3.563402 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cld_sediment.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 1.224627 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/gravity_waves_sources.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o built in 0.329612 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/module_perturb.mod cmake/atm/CMakeFiles/atm.dir/module_perturb.mod.stamp GNU [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o built in 0.535210 seconds [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemDynMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.502312 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o built in 0.325099 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_model.mod cmake/atm/CMakeFiles/atm.dir/dust_model.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 3.319730 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/boundarydata.mod cmake/atm/CMakeFiles/atm.dir/boundarydata.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/majorsp_diffusion.mod cmake/atm/CMakeFiles/atm.dir/majorsp_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soiltemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/soiltemperaturemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_scream.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_scream.mod.stamp GNU [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.589053 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rayleigh_friction.mod cmake/atm/CMakeFiles/atm.dir/rayleigh_friction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cld_sediment.mod cmake/atm/CMakeFiles/atm.dir/pkg_cld_sediment.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gravity_waves_sources.mod cmake/atm/CMakeFiles/atm.dir/gravity_waves_sources.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_gmean.mod cmake/atm/CMakeFiles/atm.dir/phys_gmean.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/physics_buffer.F90 -o CMakeFiles/atm.dir/physics_buffer.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o built in 1.738199 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o built in 2.824754 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o.provides.build [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/init_hydrology.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.840682 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnecosystemdynbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnecosystemdynbetrmod.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o built in 0.324518 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystemdynmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystemdynmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o.provides.build [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o built in 0.710256 seconds [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 2.961251 seconds [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyNoDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 3.155621 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 1.202347 seconds [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.417782 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 2.267711 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.680067 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.296742 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologynodrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologynodrainagemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build [ 81%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.354475 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.337346 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.339066 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 0.875271 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.502712 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.294406 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o built in 0.413550 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/read_volc_radiation_data.mod cmake/atm/CMakeFiles/atm.dir/read_volc_radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radheat.mod cmake/atm/CMakeFiles/atm.dir/radheat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/qbo.mod cmake/atm/CMakeFiles/atm.dir/qbo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.278674 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_surfvals.mod cmake/atm/CMakeFiles/atm.dir/chem_surfvals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/short_lived_species.mod cmake/atm/CMakeFiles/atm.dir/short_lived_species.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.759362 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o built in 0.366045 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/clybry_fam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 2.032463 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.462266 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o.provides.build [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_rename.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_rename.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.390264 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clybry_fam.mod cmake/atm/CMakeFiles/atm.dir/clybry_fam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 2.422532 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 3.286505 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.228215 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.466937 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_esmf.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_esmf.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o built in 0.604477 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o.provides.build [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o built in 0.498152 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/output_aerocom_aie.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o built in 1.151055 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/cfc11star.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.860502 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_apex.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o built in 0.428246 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airglow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o built in 0.516272 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airplane.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o built in 0.430624 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o built in 2.313480 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o built in 0.348311 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_mct.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_mct.mod.stamp GNU [ 83%] Linking CXX static library liblnd.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /usr/bin/cmake -P CMakeFiles/lnd.dir/cmake_clean_target.cmake [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /usr/bin/cmake -E cmake_link_script CMakeFiles/lnd.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc liblnd.a CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o CMakeFiles/lnd.dir/ncdio_pio.F90.o CMakeFiles/lnd.dir/dynVarMod.F90.o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o CMakeFiles/lnd.dir/restUtilMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.516123 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o.provides.build [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target liblnd.a built in 0.199337 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib liblnd.a Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.359335 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target liblnd.a built in 0.193416 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 83%] Built target lnd [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.339974 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 0.897089 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_neu_wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.447140 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o built in 0.552330 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/rate_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o built in 0.794831 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tropopause.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o built in 0.399642 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o built in 1.254616 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/slingo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o built in 1.101584 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o built in 0.893414 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.555215 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituent_burden.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.478026 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o built in 0.413035 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o built in 0.334582 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.460776 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/conv_water.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o built in 0.373148 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o built in 0.545516 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.509392 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o built in 0.575995 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/sslt_rebin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.374097 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o built in 0.467276 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o built in 0.478838 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.371545 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 1.744844 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o built in 0.444111 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sox_cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/sox_cldaero_mod.mod.stamp GNU [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/forecast.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_cycle.mod cmake/atm/CMakeFiles/atm.dir/co2_cycle.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_constituents.mod cmake/atm/CMakeFiles/atm.dir/rad_constituents.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_gasaerexch.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_gasaerexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_newnuc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_newnuc.mod.stamp GNU [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_calcsize.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o built in 0.559727 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_aerocom_aie.mod cmake/atm/CMakeFiles/atm.dir/output_aerocom_aie.mod.stamp GNU [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_wateruptake.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o built in 2.723120 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cfc11star.mod cmake/atm/CMakeFiles/atm.dir/cfc11star.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_apex.mod cmake/atm/CMakeFiles/atm.dir/mo_apex.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airglow.mod cmake/atm/CMakeFiles/atm.dir/mo_airglow.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airplane.mod cmake/atm/CMakeFiles/atm.dir/mo_airplane.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_cph.mod cmake/atm/CMakeFiles/atm.dir/mo_cph.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_exp_sol.mod cmake/atm/CMakeFiles/atm.dir/mo_exp_sol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aero_settling.mod cmake/atm/CMakeFiles/atm.dir/mo_aero_settling.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jeuv.mod cmake/atm/CMakeFiles/atm.dir/mo_jeuv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ghg_chem.mod cmake/atm/CMakeFiles/atm.dir/mo_ghg_chem.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o built in 1.084229 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_imp_sol.mod cmake/atm/CMakeFiles/atm.dir/mo_imp_sol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_neu_wetdep.mod cmake/atm/CMakeFiles/atm.dir/mo_neu_wetdep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_sad.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o built in 1.663554 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_solarproton.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rate_diags.mod cmake/atm/CMakeFiles/atm.dir/rate_diags.mod.stamp GNU [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tropopause.mod cmake/atm/CMakeFiles/atm.dir/tropopause.mod.stamp GNU [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.374935 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ebert_curry.mod cmake/atm/CMakeFiles/atm.dir/ebert_curry.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.572416 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.527116 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/slingo.mod cmake/atm/CMakeFiles/atm.dir/slingo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aoa_tracers.mod cmake/atm/CMakeFiles/atm.dir/aoa_tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_ozone_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_ozone_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituent_burden.mod cmake/atm/CMakeFiles/atm.dir/constituent_burden.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tidal_diag.mod cmake/atm/CMakeFiles/atm.dir/tidal_diag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_fraction.mod cmake/atm/CMakeFiles/atm.dir/cloud_fraction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_cover_diags.mod cmake/atm/CMakeFiles/atm.dir/cloud_cover_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/conv_water.mod cmake/atm/CMakeFiles/atm.dir/conv_water.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_update_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_update_mod.mod.stamp GNU [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.486444 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.469913 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nudging.mod cmake/atm/CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_rebin.mod cmake/atm/CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers.mod cmake/atm/CMakeFiles/atm.dir/tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_defaults.mod cmake/atm/CMakeFiles/atm.dir/history_defaults.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_scam.mod cmake/atm/CMakeFiles/atm.dir/history_scam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o.provides.build [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 1.574020 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 2.213541 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.959909 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_coag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 1.130462 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.597934 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_wateruptake.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_wateruptake.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built in 0.838564 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o built in 1.838494 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solarproton.mod cmake/atm/CMakeFiles/atm.dir/mo_solarproton.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_rates.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_rates.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/exbdrift.mod cmake/atm/CMakeFiles/atm.dir/exbdrift.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o built in 2.690517 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o built in 0.999208 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldfrc2m.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o built in 0.404259 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv.mod cmake/atm/CMakeFiles/atm.dir/zm_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc_cam.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc_cam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop_bam.mod cmake/atm/CMakeFiles/atm.dir/ndrop_bam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice_cam.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setsox.mod cmake/atm/CMakeFiles/atm.dir/mo_setsox.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/camsrfexch.mod cmake/atm/CMakeFiles/atm.dir/camsrfexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_data.mod cmake/atm/CMakeFiles/atm.dir/tracer_data.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o built in 0.564282 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_drydep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 1.394396 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.722528 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 11.045131 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.561414 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.661101 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.563465 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.416082 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.348307 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.601517 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.585660 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 2.497382 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.454567 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.515021 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.632995 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.481277 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aer_opt.mod cmake/atm/CMakeFiles/atm.dir/modal_aer_opt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.627067 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 1.117237 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.345546 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.437114 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.635166 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o built in 0.478729 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.384577 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 1.028397 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o built in 0.742689 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o built in 0.548350 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iop_surf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o built in 1.353590 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o built in 0.926637 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_drydep.mod cmake/atm/CMakeFiles/atm.dir/mo_drydep.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_deposition.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o built in 0.308113 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_convproc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o built in 0.383014 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/seasalt_model.mod cmake/atm/CMakeFiles/atm.dir/seasalt_model.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/linoz_data.mod cmake/atm/CMakeFiles/atm.dir/linoz_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_cnst.mod cmake/atm/CMakeFiles/atm.dir/tracer_cnst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_extfrc.mod cmake/atm/CMakeFiles/atm.dir/mo_extfrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lightning.mod cmake/atm/CMakeFiles/atm.dir/mo_lightning.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o built in 0.729201 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_srf_emissions.mod cmake/atm/CMakeFiles/atm.dir/mo_srf_emissions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tgcm_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_tgcm_ubc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 3.306841 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aer_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/cloud_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o built in 1.694959 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cospsimulator_intr.mod cmake/atm/CMakeFiles/atm.dir/cospsimulator_intr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation_data.mod cmake/atm/CMakeFiles/atm.dir/radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_state.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/check_energy.mod cmake/atm/CMakeFiles/atm.dir/check_energy.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug.mod cmake/atm/CMakeFiles/atm.dir/phys_debug.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat2m_macro.mod cmake/atm/CMakeFiles/atm.dir/cldwat2m_macro.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_shallow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o built in 0.724232 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv_intr.mod cmake/atm/CMakeFiles/atm.dir/zm_conv_intr.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/flux_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o built in 0.790391 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_drag.mod cmake/atm/CMakeFiles/atm.dir/gw_drag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_aero.mod cmake/atm/CMakeFiles/atm.dir/microp_aero.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o built in 2.380839 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_import_export.mod cmake/atm/CMakeFiles/atm.dir/atm_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 0.802345 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_amicphys.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_amicphys.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o built in 0.471501 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.389567 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.730263 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.436812 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.386075 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_rad_props.mod cmake/atm/CMakeFiles/atm.dir/cloud_rad_props.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radlw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o built in 0.425965 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o built in 0.427380 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_shallow.mod cmake/atm/CMakeFiles/atm.dir/convect_shallow.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hb_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.679022 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.435650 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/stratiform.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o built in 0.449956 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chlorine_loading_data.mod cmake/atm/CMakeFiles/atm.dir/chlorine_loading_data.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aerodep_flx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photoin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o built in 1.299196 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setext.mod cmake/atm/CMakeFiles/atm.dir/mo_setext.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/upper_bc.mod cmake/atm/CMakeFiles/atm.dir/upper_bc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radlw.mod cmake/atm/CMakeFiles/atm.dir/radlw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radsw.mod cmake/atm/CMakeFiles/atm.dir/radsw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hb_diff.mod cmake/atm/CMakeFiles/atm.dir/hb_diff.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o built in 0.538749 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_deep.mod cmake/atm/CMakeFiles/atm.dir/convect_deep.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/macrop_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o built in 0.626276 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/stepon.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 1.101263 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aerodep_flx.mod cmake/atm/CMakeFiles/atm.dir/aerodep_flx.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o built in 0.581228 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.585726 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o built in 0.341146 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.492780 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/molec_diff.mod cmake/atm/CMakeFiles/atm.dir/molec_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stepon.mod cmake/atm/CMakeFiles/atm.dir/stepon.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/llnl_o1d_to_2oh_adj.mod cmake/atm/CMakeFiles/atm.dir/llnl_o1d_to_2oh_adj.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 1.378765 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.739399 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o built in 1.257758 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/aero_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o built in 1.228367 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photo.mod cmake/atm/CMakeFiles/atm.dir/mo_photo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation.mod cmake/atm/CMakeFiles/atm.dir/radiation.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:83:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:84:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:45:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:44:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:43:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:42:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 1.379874 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.663355 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 2.237819 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_usrrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o built in 1.026670 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o built in 0.972873 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_gas_phase_chemdr.mod cmake/atm/CMakeFiles/atm.dir/mo_gas_phase_chemdr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waccm_hrates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o built in 0.503617 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waccm_hrates.mod cmake/atm/CMakeFiles/atm.dir/mo_waccm_hrates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.317668 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o built in 6.034936 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_intr.mod cmake/atm/CMakeFiles/atm.dir/clubb_intr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 0.893459 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o built in 1.328334 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cam_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 1.781329 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.561989 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_interface.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o built in 1.255322 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_physics.mod cmake/atm/CMakeFiles/atm.dir/restart_physics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o built in 3.340341 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_interface.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_interface.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o built in 7.064854 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.366238 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inidat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o built in 0.529033 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inidat.mod cmake/atm/CMakeFiles/atm.dir/inidat.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/startup_initialconds.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o built in 0.225198 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/startup_initialconds.mod cmake/atm/CMakeFiles/atm.dir/startup_initialconds.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o built in 2.278834 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physpkg.mod cmake/atm/CMakeFiles/atm.dir/physpkg.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/restart_dynamics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inital.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o built in 0.258198 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inital.mod cmake/atm/CMakeFiles/atm.dir/inital.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o built in 0.586867 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_dynamics.mod cmake/atm/CMakeFiles/atm.dir/restart_dynamics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o built in 0.491480 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_restart.mod cmake/atm/CMakeFiles/atm.dir/cam_restart.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/runtime_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o built in 0.473648 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_comp.mod cmake/atm/CMakeFiles/atm.dir/cam_comp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o built in 0.570985 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/runtime_opts.mod cmake/atm/CMakeFiles/atm.dir/runtime_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_mct.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o built in 0.700704 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_mct.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_mct.mod.stamp GNU [ 98%] Linking CXX static library libatm.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /usr/bin/cmake -P CMakeFiles/atm.dir/cmake_clean_target.cmake /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /usr/bin/cmake -E cmake_link_script CMakeFiles/atm.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libatm.a CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o CMakeFiles/atm.dir/physics_buffer.F90.o CMakeFiles/atm.dir/subcol_utils.F90.o CMakeFiles/atm.dir/buffer.F90.o Target libatm.a built in 0.193470 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libatm.a Target libatm.a built in 0.195348 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 98%] Built target atm make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl/CMakeFiles/e3sm.exe.dir/DependInfo.cmake --color= Scanning dependencies of target e3sm.exe make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o built in 0.128792 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/t_drv_timers_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/t_drv_timers_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o built in 0.221017 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.451855 seconds Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.159525 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.482605 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 0.795551 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.282492 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 1.064157 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.307462 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.409026 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.425672 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.231348 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o built in 0.277064 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o built in 0.349934 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o built in 0.340345 seconds Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.902188 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o.provides.build [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cplcomp_exchange_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cplcomp_exchange_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_atm_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_atm_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o built in 0.195014 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_iac_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_iac_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o built in 0.549099 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_glc_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o.provides.build [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.486017 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 0.853058 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.226286 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.385446 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.556590 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90:39:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o built in 0.440365 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o built in 0.687237 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_rest_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_rest_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o built in 1.132214 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_hist_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_hist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o built in 1.741719 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cime_comp_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cime_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o built in 0.197203 seconds [100%] Linking Fortran executable /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && /usr/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -Wl,-rpath,/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.8.0-gfortran/lib CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o -o /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe -L/usr/lib/gcc/x86_64-linux-gnu/10 ../atm/libatm.a ../lnd/liblnd.a ../ice/libice.a ../ocn/libocn.a ../rof/librof.a ../glc/libglc.a ../wav/libwav.a ../iac/libiac.a ../esp/libesp.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib/libcsm_share.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe built in 1.359674 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/CMakeFiles 0 real 245.26 user 716.85 sys 191.64 [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_DYCOMSrf01/run/atm.log.*.gz' gzip: projects/scratch/SCM_runs/test_DYCOMSrf01/run/atm.log.*.gz: No such file or directory [Pipeline] echo Not all logs were made for DYCOMSrf01. [Pipeline] sh + gzip -d projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.221014-100333.gz + cat projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.221014-100333 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts" -DCASETOOLS="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build" -DINCROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lib/include" -DLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys default -scam -nlev 72 -clubb_sgs -nadv 29 -rad rrtmg -chem trop_mam3 -silent -nlev 72 -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld real 1.65 user 1.02 sys 0.63 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/CMakeFiles /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 0%] Generating buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/buffer.F90 Scanning dependencies of target ocn make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 0%] Generating physics_buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/physics_buffer.F90 [ 0%] Generating restUtilMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/restUtilMod.F90 [ 0%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o [ 0%] Generating subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/subcol_utils.F90 [ 0%] Generating ncdio_pio.F90 Scanning dependencies of target ice cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/ncdio_pio.F90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 0%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o [ 0%] Generating dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarMod.F90 [ 0%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 [ 0%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.194545 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.140245 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.177524 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o Scanning dependencies of target atm make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.184208 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.132399 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.126514 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90:25:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o built in 0.252050 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/landunit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.296850 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.697443 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o built in 0.130018 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_fileunits.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o [ 2%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o built in 0.240570 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o built in 0.154827 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o built in 0.285428 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffixed-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/mpishorthand.F -o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o built in 0.310790 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/ocn_comp_mct.mod cmake/ocn/CMakeFiles/ocn.dir/ocn_comp_mct.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o built in 0.143086 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o.provides.build [ 2%] Linking CXX static library libocn.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && /usr/bin/cmake -P CMakeFiles/ocn.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_communicate.mod cmake/ice/CMakeFiles/ice.dir/ice_communicate.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && /usr/bin/cmake -E cmake_link_script CMakeFiles/ocn.dir/link.txt --verbose=1 /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_constants.mod cmake/ice/CMakeFiles/ice.dir/ice_constants.mod.stamp GNU python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libocn.a CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain_size.mod cmake/ice/CMakeFiles/ice.dir/ice_domain_size.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o built in 0.225196 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fileunits.mod cmake/ice/CMakeFiles/ice.dir/ice_fileunits.mod.stamp GNU [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o Target libocn.a built in 0.004309 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libocn.a [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_broadcast.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o Target libocn.a built in 0.005141 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 2%] Built target ocn /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_scam.mod cmake/ice/CMakeFiles/ice.dir/ice_scam.mod.stamp GNU make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof/CMakeFiles/rof.dir/DependInfo.cmake --color= Target CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o built in 0.291786 seconds Scanning dependencies of target rof make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/namelist_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o [ 2%] Building Fortran object cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/rof/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.srof -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90 -o CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o built in 0.227910 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o Target CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o built in 0.184661 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/rof/rof_comp_mct.mod cmake/rof/CMakeFiles/rof.dir/rof_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library librof.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof && /usr/bin/cmake -P CMakeFiles/rof.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof && /usr/bin/cmake -E cmake_link_script CMakeFiles/rof.dir/link.txt --verbose=1 Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o built in 0.391973 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc librof.a CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o built in 0.277857 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o Target librof.a built in 0.003160 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib librof.a [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o built in 0.191845 seconds Target librof.a built in 0.002994 seconds /usr/bin/cmake -E touch cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o.provides.build [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 3%] Built target rof make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= Scanning dependencies of target glc make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 3%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.260318 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o built in 0.212993 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o.provides.build [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SpeciesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.284731 seconds Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.172786 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o.provides.build [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/infnan.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o.provides.build [ 3%] Linking CXX static library libglc.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_exit.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target libglc.a built in 0.004136 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a Target libglc.a built in 0.004800 seconds /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 3%] Built target glc /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_broadcast.mod cmake/ice/CMakeFiles/ice.dir/ice_broadcast.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.196963 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varsur.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o built in 0.152080 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_atmo.mod cmake/ice/CMakeFiles/ice.dir/ice_atmo.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_calendar.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o built in 0.288036 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_instance.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o built in 0.222749 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o built in 0.235636 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.213739 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_blocks.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o built in 0.276860 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o built in 0.238678 seconds Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.273619 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNBeTRIndicatorMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.293852 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/string_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.231478 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.307911 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.474077 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_spacecurve.mod cmake/ice/CMakeFiles/ice.dir/ice_spacecurve.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.327957 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/params_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o built in 0.246746 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/ll_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o built in 0.159417 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.232393 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o.provides.build [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability_tools.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.270804 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.167649 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o built in 0.293188 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.232455 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.304064 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sort_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o built in 0.237681 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.282748 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.254437 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.284737 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.231405 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/chem_mods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o built in 0.239317 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_varorb.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o built in 0.239411 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o built in 0.269950 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.197991 seconds make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 5%] Building Fortran object cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/wav/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.215630 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o built in 1.132892 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_distribution.mod cmake/ice/CMakeFiles/ice.dir/ice_distribution.mod.stamp GNU [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o [ 6%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.296167 seconds [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/cam_cpl_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o Target CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o built in 0.181879 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/wav/wav_comp_mct.mod cmake/wav/CMakeFiles/wav.dir/wav_comp_mct.mod.stamp GNU /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90:32:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement [ 8%] Linking CXX static library libwav.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav && /usr/bin/cmake -P CMakeFiles/wav.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav && /usr/bin/cmake -E cmake_link_script CMakeFiles/wav.dir/link.txt --verbose=1 Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o built in 0.222233 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libwav.a CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o Target libwav.a built in 0.004362 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libwav.a Target libwav.a built in 0.004234 seconds /usr/bin/cmake -E touch cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 8%] Built target wav [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.474231 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o built in 0.232181 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o.provides.build make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= Target CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o built in 0.367873 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_global_reductions.mod cmake/ice/CMakeFiles/ice.dir/ice_global_reductions.mod.stamp GNU Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/srf_field_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o [ 9%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.siac -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90 -o CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o [ 9%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o built in 0.237677 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90:61:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.168794 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU [ 9%] Linking CXX static library libiac.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac && /usr/bin/cmake -E cmake_link_script CMakeFiles/iac.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libiac.a CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o built in 0.295984 seconds Target libiac.a built in 0.003582 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libiac.a [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.218944 seconds Target libiac.a built in 0.004431 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 10%] Built target iac [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.237657 seconds make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp/CMakeFiles/esp.dir/DependInfo.cmake --color= Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.212379 seconds Scanning dependencies of target esp make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.327359 seconds make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o [ 10%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.160450 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU [ 11%] Linking CXX static library libesp.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.235413 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target libesp.a built in 0.003474 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o built in 0.283311 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/error_function.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o Target libesp.a built in 0.003560 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 11%] Built target esp [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_methods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o built in 0.239470 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.359907 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.337535 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.233134 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.239397 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.235868 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o built in 0.316570 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o built in 0.315874 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.212481 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.224921 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 2.315439 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.232049 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.263680 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.314978 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/m_sad_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.290815 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.223281 seconds [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_gather_scatter.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.250549 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.301595 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.182403 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.228701 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.299555 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.194678 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o built in 0.288728 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.210663 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.237230 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.909702 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.436447 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o built in 0.256422 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.241923 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o built in 0.234443 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.224606 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.268947 seconds Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.167372 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.421034 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.228095 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o built in 0.225509 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.269292 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o built in 0.267072 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.221789 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.231875 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.646303 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_pio.mod cmake/ice/CMakeFiles/ice.dir/ice_pio.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.308354 seconds [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.269846 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.224180 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.288081 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.369779 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.240640 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o built in 0.478210 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_read_write.mod cmake/ice/CMakeFiles/ice.dir/ice_read_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.226316 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.291936 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.279305 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o built in 0.224375 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.344664 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.218051 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o built in 0.268647 seconds [ 19%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o built in 0.264970 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.226428 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.437952 seconds [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.538960 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.227408 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.276719 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build [ 19%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.233630 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.267552 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.282139 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.243009 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.245295 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.293471 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.282117 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o built in 0.782465 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.233006 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_grid.mod cmake/ice/CMakeFiles/ice.dir/ice_grid.mod.stamp GNU [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.219070 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.257634 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.286742 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.227099 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.195635 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.248525 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.270435 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.202889 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.194020 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.213469 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.273284 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.987343 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.275396 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.183119 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.231032 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.222402 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.276647 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.230683 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.225216 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.264383 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.213287 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.252046 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.211561 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.212790 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o built in 0.284050 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.212978 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.259250 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.220954 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.233472 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.197891 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.274791 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.206410 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.209311 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.259314 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.831378 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_ocean.mod cmake/ice/CMakeFiles/ice.dir/ice_ocean.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_remap.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_remap.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o built in 0.225138 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o built in 0.269035 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o built in 0.203890 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varctl.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.332065 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdmod.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/landunit_varcon.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.519113 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesconstantsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesconstantsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.273902 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.260463 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/error_code.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_kind_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_kind_mod.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/model_flags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/speciesmod.mod cmake/lnd/CMakeFiles/lnd.dir/speciesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varsur.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varsur.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o built in 0.835638 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o built in 0.285949 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.382767 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o built in 0.334425 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o built in 0.260235 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvemod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_nlutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_nlutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnbetrindicatormod.mod cmake/lnd/CMakeFiles/lnd.dir/cnbetrindicatormod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_decompmod.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.294110 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o built in 0.350659 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_names.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o built in 0.676607 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restart.mod cmake/ice/CMakeFiles/ice.dir/ice_restart.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.217066 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_prescribed_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_prescribed_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_driver.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_driver.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.247566 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o built in 0.280619 seconds Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.144912 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mt95.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pbl_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.227906 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.194444 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o built in 0.288576 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/trb_mtn_stress.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_pftvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_pftvarcontype.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o built in 0.441967 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_aerosol.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.599160 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o built in 0.299470 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o built in 0.329870 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vdiff_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o built in 0.244958 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/topounit_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varorb.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varorb.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelconstants.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelconstants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_constants.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o built in 0.296124 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_constants.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_filter_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_filter_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_landunit_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_constants.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o built in 0.598464 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_constants.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_age.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_bounds.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_bounds.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o built in 0.368636 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varctl.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_vertical.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varpar.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/elm_cpl_indices.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o built in 0.273172 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o built in 0.268361 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/random_xgc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o built in 0.293175 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_finalizeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o built in 0.328265 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/srchutil.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o built in 0.208061 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelptmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelptmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/eoswatermod.mod cmake/lnd/CMakeFiles/lnd.dir/eoswatermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobconstants.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobconstants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobvsfm.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobvsfm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsvsfmtype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsvsfmtype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o built in 0.270602 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/unstructuredgridtype.mod cmake/lnd/CMakeFiles/lnd.dir/unstructuredgridtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ecuyer_random.mod cmake/atm/CMakeFiles/atm.dir/ecuyer_random.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/conditiontype.mod cmake/lnd/CMakeFiles/lnd.dir/conditiontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/connectionsettype.mod cmake/lnd/CMakeFiles/lnd.dir/connectionsettype.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/couplingvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/couplingvariabletype.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/governingequationbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/governingequationbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/meshtype.mod cmake/lnd/CMakeFiles/lnd.dir/meshtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/solvertype.mod cmake/lnd/CMakeFiles/lnd.dir/solvertype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsbasepointertype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsbasepointertype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesswtype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesswtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesnowtype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesnowtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesoiltype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesoiltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobthermal.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobthermal.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermalauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermalauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermalauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermalauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermaltype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermaltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturebaseauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturebaseauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesswauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesswauxmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o built in 1.033099 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesswauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesswauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesnowauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesnowauxmod.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/code_timer_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesnowauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesnowauxtype.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.259574 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxmod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o built in 1.274803 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxtype.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/arraydimthree.mod cmake/lnd/CMakeFiles/lnd.dir/arraydimthree.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.181006 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o.provides.build [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_meltpond.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o built in 0.299482 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.259483 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_netcdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90:26:0: #include <mpif.h> ! mpi library include file Warning: extra tokens at end of #include directive [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/marsaglia.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o built in 0.251989 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_mesh_utils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_mesh_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_shr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_shr_log_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnrichardsodepressuretype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnrichardsodepressuretype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/porosityfunctionmod.mod cmake/lnd/CMakeFiles/lnd.dir/porosityfunctionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsmod.mod cmake/lnd/CMakeFiles/lnd.dir/richardsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/richardsodepressureauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/richardsodepressureauxtype.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.255904 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/richardsodepressureconnauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/richardsodepressureconnauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_esmf.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_esmf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_import_export.mod cmake/ice/CMakeFiles/ice.dir/ice_import_export.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/saturationfunction.mod cmake/lnd/CMakeFiles/lnd.dir/saturationfunction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_aerosol.mod cmake/ice/CMakeFiles/ice.dir/ice_aerosol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsvsfmauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsvsfmauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_age.mod cmake/ice/CMakeFiles/ice.dir/ice_age.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_vertical.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_vertical.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fy.mod cmake/ice/CMakeFiles/ice.dir/ice_fy.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o built in 0.279088 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_fields.mod cmake/ice/CMakeFiles/ice.dir/ice_history_fields.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_lvl.mod cmake/ice/CMakeFiles/ice.dir/ice_lvl.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_meltpond.mod cmake/ice/CMakeFiles/ice.dir/ice_meltpond.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o built in 0.288865 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o.provides.build [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/quicksort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/xpavg_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_diagnostics.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o built in 0.234630 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o built in 0.295831 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.301046 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_history_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o.provides.build [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/getdatetime.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.285611 seconds [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.219855 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o built in 0.450701 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.253509 seconds [ 25%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o built in 0.237037 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.426916 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 1.399654 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.262500 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.376027 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.270827 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 1.136792 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.245716 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.135682 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o built in 0.601940 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o built in 0.212507 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiodimensionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiodimensionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.118564 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.294510 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.285830 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o [ 26%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_slmm.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.318928 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o built in 1.573742 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.350289 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o built in 0.274140 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o built in 0.238250 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_const_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_const_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_utils.mod cmake/lnd/CMakeFiles/lnd.dir/betr_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/func_data_type_mod.mod cmake/lnd/CMakeFiles/lnd.dir/func_data_type_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/somstatevarupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/somstatevarupdatemod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o built in 0.209221 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/btridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/btridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurveclapphornberg1978mod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurveclapphornberg1978mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_cpl_indices.mod cmake/lnd/CMakeFiles/lnd.dir/elm_cpl_indices.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_finalizemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_finalizemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o built in 1.192996 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o.provides.build [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_restoring.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landunittype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landunittype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varpar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/domainmod.mod cmake/lnd/CMakeFiles/lnd.dir/domainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesglobals.mod cmake/lnd/CMakeFiles/lnd.dir/fatesglobals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtparametersmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtparametersmod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/column_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o built in 0.399513 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_shortwave.mod cmake/ice/CMakeFiles/ice.dir/ice_shortwave.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restoring.mod cmake/ice/CMakeFiles/ice.dir/ice_restoring.mod.stamp GNU [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_RunMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o built in 0.223272 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_infnan_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_infnan_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_log_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracer_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/tracer_varcon.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o built in 0.195155 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxtype.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o built in 0.217633 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.239828 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.236630 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.168461 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o built in 1.599916 seconds [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_step_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o built in 0.285727 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbasetype.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o built in 0.322965 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o built in 7.146487 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o.provides.build [ 27%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_test.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o built in 0.221650 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o built in 0.917191 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o.provides.build [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_init.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o built in 0.204550 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o built in 5.613307 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_runmod.mod cmake/ice/CMakeFiles/ice.dir/cice_runmod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o built in 0.282269 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o built in 0.912553 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/datetime.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.377934 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o.provides.build [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o built in 1.036436 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_init.mod cmake/ice/CMakeFiles/ice.dir/ice_init.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o built in 0.279853 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_abortutils.mod cmake/atm/CMakeFiles/atm.dir/cam_abortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_logfile.mod cmake/atm/CMakeFiles/atm.dir/cam_logfile.mod.stamp GNU [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_InitMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mpishorthand.mod cmake/atm/CMakeFiles/atm.dir/mpishorthand.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_utils.mod cmake/atm/CMakeFiles/atm.dir/namelist_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ppgrid.mod cmake/atm/CMakeFiles/atm.dir/ppgrid.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/units.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o built in 0.245267 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o built in 0.495252 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTGenericMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o built in 0.286179 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/column_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/column_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod cmake/atm/CMakeFiles/atm.dir/infnan.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o built in 0.353362 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_instance.mod cmake/atm/CMakeFiles/atm.dir/cam_instance.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dycore.mod cmake/atm/CMakeFiles/atm.dir/dycore.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o built in 0.334694 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o built in 0.637400 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiovariablekindmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiovariablekindmod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o built in 0.349069 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o built in 1.076513 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_initmod.mod cmake/ice/CMakeFiles/ice.dir/cice_initmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o.provides.build [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o built in 0.288911 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/kinds.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o built in 0.648760 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/thread_mod.mod cmake/atm/CMakeFiles/atm.dir/thread_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o built in 0.210887 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/string_utils.mod cmake/atm/CMakeFiles/atm.dir/string_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/params_mod.mod cmake/atm/CMakeFiles/atm.dir/params_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ll_mod.mod cmake/atm/CMakeFiles/atm.dir/ll_mod.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_nf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/domain_mod.mod cmake/atm/CMakeFiles/atm.dir/domain_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/betr_varcon.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o built in 0.607378 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sort_mod.mod cmake/atm/CMakeFiles/atm.dir/sort_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantnutkineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantnutkineticsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_regression_module.mod cmake/lnd/CMakeFiles/lnd.dir/betr_regression_module.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_types.mod cmake/atm/CMakeFiles/atm.dir/m_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatussimtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatussimtype.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/geopotential.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o built in 0.274592 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o built in 0.469104 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pspect.mod cmake/atm/CMakeFiles/atm.dir/pspect.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/centuryecaouttype.mod cmake/lnd/CMakeFiles/lnd.dir/centuryecaouttype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o built in 0.347143 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_mods.mod cmake/atm/CMakeFiles/atm.dir/chem_mods.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o.provides.build [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/buffer.F90 -o CMakeFiles/atm.dir/buffer.F90.o [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radconstants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o built in 0.989371 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_mct.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_mct.mod.stamp GNU [ 28%] Linking CXX static library libice.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && /usr/bin/cmake -P CMakeFiles/ice.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && /usr/bin/cmake -E cmake_link_script CMakeFiles/ice.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libice.a CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o built in 0.256720 seconds Target libice.a built in 0.021072 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o.provides.build python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libice.a /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o.provides.build Target libice.a built in 0.022746 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o.provides.build [ 28%] Built target ice /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_sections.mod cmake/atm/CMakeFiles/atm.dir/sslt_sections.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydrowtfmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydrowtfmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_cpl_indices.mod cmake/atm/CMakeFiles/atm.dir/cam_cpl_indices.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateslittermod.mod cmake/lnd/CMakeFiles/lnd.dir/fateslittermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srf_field_check.mod cmake/atm/CMakeFiles/atm.dir/srf_field_check.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtgenericmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtgenericmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_util.mod cmake/atm/CMakeFiles/atm.dir/mo_util.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_spc_id.mod cmake/atm/CMakeFiles/atm.dir/m_spc_id.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o built in 0.345029 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.364960 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_function.mod cmake/atm/CMakeFiles/atm.dir/error_function.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_methods.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_methods.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.344944 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.726121 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o built in 0.306058 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o built in 0.328174 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o built in 0.276942 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o built in 0.270534 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o built in 0.279742 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_patchtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_patchtype.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/QSatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o Target CMakeFiles/atm.dir/buffer.F90.o built in 1.697863 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_aerocondtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_aerocondtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_factor.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_factor.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o.provides.build [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o built in 0.240458 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o built in 0.321802 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o built in 0.293155 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o.provides.build [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o.provides.build [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_inter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o.provides.build [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o built in 0.305150 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o built in 0.304148 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o built in 0.385597 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_schu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o built in 0.366658 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o built in 0.312661 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_zadj.mod cmake/atm/CMakeFiles/atm.dir/mo_zadj.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o built in 0.295980 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o built in 0.281988 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o built in 0.342716 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o built in 0.278304 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_sad_data.mod cmake/atm/CMakeFiles/atm.dir/m_sad_data.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spehox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o built in 0.318460 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jpl.mod cmake/atm/CMakeFiles/atm.dir/mo_jpl.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o built in 0.274446 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rxt_rates_conv.mod cmake/atm/CMakeFiles/atm.dir/mo_rxt_rates_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtlossfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtlossfluxesmod.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_heatnirco2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o built in 0.449357 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sv_decomp.mod cmake/atm/CMakeFiles/atm.dir/sv_decomp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryvariabletype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o built in 0.316226 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartvariablemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartvariablemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o built in 0.271637 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeostatetype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeostatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_columntype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_columntype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/biogeocontype.mod cmake/lnd/CMakeFiles/lnd.dir/biogeocontype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/qsatmod.mod cmake/lnd/CMakeFiles/lnd.dir/qsatmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_rxt_id.mod cmake/atm/CMakeFiles/atm.dir/m_rxt_id.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columntype.mod cmake/lnd/CMakeFiles/lnd.dir/columntype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelltype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelltype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunittype.mod cmake/lnd/CMakeFiles/lnd.dir/landunittype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationtype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydraulicsmemmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydraulicsmemmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o.provides.build [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/ncdio_pio.F90 -o CMakeFiles/lnd.dir/ncdio_pio.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o.provides.build [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNDecompCascadeConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_sys_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_sys_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cmparray_mod.mod cmake/atm/CMakeFiles/atm.dir/cmparray_mod.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeCon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o built in 0.212114 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbtpar.mod cmake/atm/CMakeFiles/atm.dir/hirsbtpar.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o built in 0.322169 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parrrsw.mod cmake/atm/CMakeFiles/atm.dir/parrrsw.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PlantMicKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o built in 0.974470 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parrrtm.mod cmake/atm/CMakeFiles/atm.dir/parrrtm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_random_numbers.mod cmake/atm/CMakeFiles/atm.dir/mcica_random_numbers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mersennetwister.mod cmake/atm/CMakeFiles/atm.dir/mersennetwister.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_con.mod cmake/atm/CMakeFiles/atm.dir/rrlw_con.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o built in 0.290527 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrlw_vsn.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o built in 0.409692 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrlw_cld.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o built in 0.247823 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg01.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg01.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o built in 0.269383 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg02.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg02.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg03.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg03.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg04.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg04.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg05.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg05.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg06.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg06.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg07.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg07.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg08.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg08.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg09.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg09.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg10.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg10.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg11.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg11.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg12.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg12.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg13.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg13.mod.stamp GNU Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 1.210966 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg14.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg14.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg15.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg15.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg16.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg16.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrlw_tbl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrlw_ref.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_con.mod cmake/atm/CMakeFiles/atm.dir/rrsw_con.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_vsn.mod.stamp GNU [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.255797 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.455117 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrsw_cld.mod.stamp GNU [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.246519 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.268493 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.299676 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.285847 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o built in 0.238019 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o built in 0.288829 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.281866 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.294197 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.280961 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 1.792629 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o.provides.build [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.280850 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.277349 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o.provides.build [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.279983 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/GetGlobalValuesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o built in 0.291937 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o built in 0.258947 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.mod.stamp GNU [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.278294 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.288532 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cndecompcascadecontype.mod cmake/lnd/CMakeFiles/lnd.dir/cndecompcascadecontype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.347905 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.263451 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o built in 0.286948 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o built in 0.271795 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakecon.mod cmake/lnd/CMakeFiles/lnd.dir/lakecon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrsw_tbl.mod.stamp GNU [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/tridiagonalmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o built in 0.449053 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrsw_ref.mod.stamp GNU [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantmickineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantmickineticsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_vrtqdr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_vrtqdr.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_precision.mod cmake/atm/CMakeFiles/atm.dir/clubb_precision.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o built in 0.395322 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/babortutils.mod cmake/lnd/CMakeFiles/lnd.dir/babortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_bgctype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_bgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_code.mod cmake/atm/CMakeFiles/atm.dir/error_code.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_thtype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_thtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_flags.mod cmake/atm/CMakeFiles/atm.dir/model_flags.mod.stamp GNU [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initVerticalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameter_indices.mod cmake/atm/CMakeFiles/atm.dir/parameter_indices.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/daylengthmod.mod cmake/lnd/CMakeFiles/lnd.dir/daylengthmod.mod.stamp GNU [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o built in 0.273889 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncolumntemplatemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncolumntemplatemod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o built in 0.324815 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_interfaces.mod cmake/atm/CMakeFiles/atm.dir/lapack_interfaces.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpriorweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpriorweightsmod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/endian.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o built in 0.294577 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynedmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_names.mod cmake/atm/CMakeFiles/atm.dir/input_names.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mt95.mod cmake/atm/CMakeFiles/atm.dir/mt95.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pbl_utils.mod cmake/atm/CMakeFiles/atm.dir/pbl_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/trb_mtn_stress.mod cmake/atm/CMakeFiles/atm.dir/trb_mtn_stress.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o built in 0.322401 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_utils.mod cmake/atm/CMakeFiles/atm.dir/gw_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vdiff_lu_solver.mod cmake/atm/CMakeFiles/atm.dir/vdiff_lu_solver.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_timer_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_timer_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_utils.mod cmake/atm/CMakeFiles/atm.dir/physics_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_data.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_data.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_5.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o built in 0.310858 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_arrays.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/math_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o built in 0.809526 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/getglobalvaluesmod.mod cmake/lnd/CMakeFiles/lnd.dir/getglobalvaluesmod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/restUtilMod.F90 -o CMakeFiles/lnd.dir/restUtilMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o built in 0.296028 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edtypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edtypesmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o built in 0.324770 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/parameters_silhs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_assert_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_assert_mod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/diffusion_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o built in 0.310834 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.599166 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/random_xgc.mod cmake/atm/CMakeFiles/atm.dir/random_xgc.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o built in 0.763423 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o built in 0.523401 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o built in 0.463445 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_dataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o built in 0.281239 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o built in 0.420973 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/gauaw_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initverticalmod.mod cmake/lnd/CMakeFiles/lnd.dir/initverticalmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o built in 0.348969 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srchutil.mod cmake/atm/CMakeFiles/atm.dir/srchutil.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/vrtmap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o built in 0.330317 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.300085 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/restutilmod.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o built in 0.587693 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o built in 0.263630 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesallometrymod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesallometrymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtracertype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtracertype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/kineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/kineticsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_timemod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_timemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o built in 0.403548 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o built in 0.698592 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scyc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_datatype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_datatype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o built in 0.299774 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o built in 0.322340 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o built in 0.245146 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/code_timer_module.mod cmake/atm/CMakeFiles/atm.dir/code_timer_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_string_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_string_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o built in 0.335264 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/abortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacetypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacetypesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_netcdf.mod cmake/atm/CMakeFiles/atm.dir/output_netcdf.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_time_manager.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mathfuncmod.mod cmake/lnd/CMakeFiles/lnd.dir/mathfuncmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/soilorder_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o built in 0.304465 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanParamsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o built in 0.390845 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParametersInterface.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.558108 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/paramUtilMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.288175 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o built in 0.468209 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o built in 0.250135 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.462547 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 1.220952 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o built in 0.603240 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.294355 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.254354 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.252835 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.271169 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.279004 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.295122 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.378134 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o built in 0.308937 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerboundarycondtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerboundarycondtype.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o built in 0.461220 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o built in 0.440181 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetwatisomod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetwatisomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o built in 0.541800 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.382157 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 1.267572 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.353973 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.270060 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MEGANFactorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o built in 0.257932 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.795204 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.383535 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.350593 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.413661 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.285483 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.253385 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initInterp.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o built in 0.272733 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BandDiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o built in 0.546950 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/marsaglia.mod cmake/atm/CMakeFiles/atm.dir/marsaglia.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quicksort.mod cmake/atm/CMakeFiles/atm.dir/quicksort.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o.provides.build [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/sgexx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o built in 0.348728 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o built in 0.740537 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o built in 9.888847 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.234543 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.290962 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clm_time_manager.mod cmake/lnd/CMakeFiles/lnd.dir/clm_time_manager.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.267855 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.254407 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.571979 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 1.084970 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o built in 1.395905 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o built in 0.322006 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/AnnualFluxDribbler.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 2.443145 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.285635 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpatchstateupdatermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpatchstateupdatermod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/bnddyi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o built in 0.383927 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o built in 0.258226 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilorder_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/soilorder_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanparamstype.mod cmake/lnd/CMakeFiles/lnd.dir/urbanparamstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparametersinterface.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparametersinterface.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/paramutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/paramutilmod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.304033 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o built in 0.294892 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/fft99.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o built in 0.507023 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynTimeInfoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o built in 0.271236 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/units.mod cmake/atm/CMakeFiles/atm.dir/units.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edaccumulatefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edaccumulatefluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/drydep_mod.mod cmake/atm/CMakeFiles/atm.dir/drydep_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccarbonmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccarbonmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_messages.mod cmake/atm/CMakeFiles/atm.dir/error_messages.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccnpmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccnpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_data.mod cmake/atm/CMakeFiles/atm.dir/interpolate_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/checksbalancesmod.mod cmake/lnd/CMakeFiles/lnd.dir/checksbalancesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/kinds.mod cmake/atm/CMakeFiles/atm.dir/kinds.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/funcpedotransfermod.mod cmake/lnd/CMakeFiles/lnd.dir/funcpedotransfermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wrap_nf.mod cmake/atm/CMakeFiles/atm.dir/wrap_nf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/quadraticmod.mod cmake/lnd/CMakeFiles/lnd.dir/quadraticmod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/time_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o built in 0.937763 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/organicfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/organicfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sharedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sharedparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridcontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridcontrolmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o built in 0.597187 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpindextype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpindextype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geopotential.mod cmake/atm/CMakeFiles/atm.dir/geopotential.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpcompettype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpcompettype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/findrootmod.mod cmake/lnd/CMakeFiles/lnd.dir/findrootmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracercoefftype.mod cmake/lnd/CMakeFiles/lnd.dir/tracercoefftype.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tracname.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/interpolationmod.mod cmake/lnd/CMakeFiles/lnd.dir/interpolationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/bncdio_pio.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/chemstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/chemstatetype.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o built in 0.293377 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/SoilorderConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o built in 0.301593 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvefactorymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvefactorymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/buffer.mod cmake/atm/CMakeFiles/atm.dir/buffer.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/meganfactorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/meganfactorsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radconstants.mod cmake/atm/CMakeFiles/atm.dir/radconstants.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lsparsematmod.mod cmake/lnd/CMakeFiles/lnd.dir/lsparsematmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_indprd.mod cmake/atm/CMakeFiles/atm.dir/mo_indprd.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o built in 0.366501 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_prod_loss.mod cmake/atm/CMakeFiles/atm.dir/mo_prod_loss.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_adjrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_adjrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o built in 0.259763 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdgathscatmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdgathscatmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lin_matrix.mod cmake/atm/CMakeFiles/atm.dir/mo_lin_matrix.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_nln_matrix.mod cmake/atm/CMakeFiles/atm.dir/mo_nln_matrix.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/domainlateralmod.mod cmake/lnd/CMakeFiles/lnd.dir/domainlateralmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncolumnstateupdatermod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncolumnstateupdatermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_negtrc.mod cmake/atm/CMakeFiles/atm.dir/mo_negtrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_inter.mod cmake/atm/CMakeFiles/atm.dir/mo_inter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datadimensionmod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datadimensionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/initinterpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_schu.mod cmake/atm/CMakeFiles/atm.dir/mo_schu.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_calcoe.mod cmake/atm/CMakeFiles/atm.dir/mo_calcoe.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/banddiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/banddiagonalmod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridRestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_phtadj.mod cmake/atm/CMakeFiles/atm.dir/mo_phtadj.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spehox.mod cmake/atm/CMakeFiles/atm.dir/spehox.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_heatnirco2.mod cmake/atm/CMakeFiles/atm.dir/mo_heatnirco2.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o built in 0.316289 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_wvn.mod cmake/atm/CMakeFiles/atm.dir/rrlw_wvn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_wvn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_wvn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_nl_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_nl_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_aer.mod cmake/atm/CMakeFiles/atm.dir/rrsw_aer.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg16.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg16.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columnmod.mod cmake/lnd/CMakeFiles/lnd.dir/columnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg17.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg17.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg18.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg18.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitmod.mod cmake/lnd/CMakeFiles/lnd.dir/landunitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/patchmod.mod cmake/lnd/CMakeFiles/lnd.dir/patchmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg19.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg19.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg20.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg20.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg21.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg21.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg22.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg22.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg23.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg23.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg24.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg24.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg25.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg25.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o built in 0.654009 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg26.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg26.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg27.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg27.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg28.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg28.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/pftvarcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg29.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg29.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/accumulMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounittype.mod cmake/lnd/CMakeFiles/lnd.dir/topounittype.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.363924 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4varcon.mod cmake/lnd/CMakeFiles/lnd.dir/ch4varcon.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o built in 0.398557 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationPropertiesType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o built in 0.478988 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_reftra.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_reftra.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o built in 0.296150 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.457984 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o built in 0.228025 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/array_index.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o built in 0.207819 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtinitparamsfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtinitparamsfatesmod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/constants_clubb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o built in 1.086488 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyntimeinfomod.mod cmake/lnd/CMakeFiles/lnd.dir/dyntimeinfomod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.252947 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/RootBiophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o built in 1.046536 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_model.mod cmake/atm/CMakeFiles/atm.dir/parameters_model.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o built in 0.322408 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stat_file_module.mod cmake/atm/CMakeFiles/atm.dir/stat_file_module.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o built in 0.300535 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/endian.mod cmake/atm/CMakeFiles/atm.dir/endian.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.297929 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o built in 0.355330 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o built in 0.289521 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/filterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o built in 0.376350 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.352993 seconds [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o built in 0.518049 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_5.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_5.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbalancemod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbalancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_arrays.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_arrays.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilordercontype.mod cmake/lnd/CMakeFiles/lnd.dir/soilordercontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/math_utilities.mod cmake/atm/CMakeFiles/atm.dir/math_utilities.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o built in 0.260948 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_silhs.mod cmake/atm/CMakeFiles/atm.dir/parameters_silhs.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion_solver.mod cmake/atm/CMakeFiles/atm.dir/diffusion_solver.mod.stamp GNU [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.269898 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.298882 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gauaw_mod.mod cmake/atm/CMakeFiles/atm.dir/gauaw_mod.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o built in 1.218889 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 0.817177 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o built in 0.252264 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.265332 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vrtmap_mod.mod cmake/atm/CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.280090 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.255503 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.334347 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o built in 0.303385 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scyc.mod cmake/atm/CMakeFiles/atm.dir/scyc.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initSubgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o built in 0.320534 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o built in 0.366464 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o built in 0.497569 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/accumulmod.mod cmake/lnd/CMakeFiles/lnd.dir/accumulmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridAveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o built in 0.446037 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationpropertiestype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationpropertiestype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessynchronizedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessynchronizedparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o built in 0.579614 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdutilsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o built in 9.842671 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.252615 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpforctype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpforctype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/odemod.mod cmake/lnd/CMakeFiles/lnd.dir/odemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgcmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/filtermod.mod cmake/lnd/CMakeFiles/lnd.dir/filtermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/transportmod.mod cmake/lnd/CMakeFiles/lnd.dir/transportmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sgexx.mod cmake/atm/CMakeFiles/atm.dir/sgexx.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o built in 0.298494 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/buffer.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o built in 0.824706 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o built in 0.309371 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bhistfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/bhistfilemod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ComputeSeedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o built in 0.299515 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompinitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_datamod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o built in 0.333618 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initsubgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/initsubgridmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o built in 0.302666 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridavemod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridavemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynfilemod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDPftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessizeagetypeindicesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessizeagetypeindicesmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.235013 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o built in 0.338055 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o built in 0.979264 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_pflotranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o built in 0.232244 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o built in 0.399590 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/diocplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopeplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopeplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/mockplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/computeseedmod.mod cmake/lnd/CMakeFiles/lnd.dir/computeseedmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 1.212082 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.653920 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarMod.F90 -o CMakeFiles/lnd.dir/dynVarMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o built in 1.177163 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.392793 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.340620 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o built in 0.568400 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o built in 2.622052 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspaTarget CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o built in 0.594511 seconds ce/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpdecomptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpdecomptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgccnptype.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgccnptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_pflotranmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_pflotranmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o built in 1.975669 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o built in 0.855439 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.902327 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/histfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/histfilemod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_paraminterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o built in 0.250812 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvarmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvarmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o built in 0.220088 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplanthydraulicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplanthydraulicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparameterderivedmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparameterderivedmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o built in 0.850879 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessoilbgcfluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessoilbgcfluxmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfmainmod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/EnergyFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o built in 0.447662 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o built in 0.442259 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o built in 0.395276 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o built in 0.463101 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SolarAbsorbedType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 7.955546 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90:53:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o built in 0.465668 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o.provides.build [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o built in 0.416268 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_mod.mod cmake/atm/CMakeFiles/atm.dir/time_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tracname.mod cmake/atm/CMakeFiles/atm.dir/mo_tracname.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_setrxt.mod.stamp GNU [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o built in 0.909729 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o.provides.build [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o built in 0.279327 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o.provides.build [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 0.714000 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.455406 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o built in 0.626312 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o built in 0.498564 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o built in 0.285445 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o built in 0.355627 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o built in 0.834376 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.553063 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_setcoef.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o built in 0.380531 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprmc.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o built in 0.685031 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.625389 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprop.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o built in 0.532277 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_taumol.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o built in 1.527888 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/array_index.mod cmake/atm/CMakeFiles/atm.dir/array_index.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constants_clubb.mod cmake/atm/CMakeFiles/atm.dir/constants_clubb.mod.stamp GNU [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o built in 0.276854 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o built in 0.332892 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o built in 0.651518 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.280107 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.433849 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o built in 0.441552 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o built in 0.590454 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.289924 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.249515 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_roots.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o built in 0.249251 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/diocbgcreactionstype.mod.stamp GNU [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.250292 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopebgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopebgcreactionstype.mod.stamp GNU [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o built in 0.351527 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/mockbgcreactionstype.mod.stamp GNU [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_tsdadg_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o built in 0.407114 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o built in 1.814161 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o built in 0.398620 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sigma_sqd_w_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o built in 0.432099 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calendar.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.331160 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.312222 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glcDiagnosticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 2.483021 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o built in 0.259697 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.382496 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.335391 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o built in 0.338093 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Nc_Ncn_eqns.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o built in 0.302415 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_diffusion.mod cmake/atm/CMakeFiles/atm.dir/gw_diffusion.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.316035 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_utils.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o built in 0.268485 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.332251 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/transform_to_pdf_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.297464 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scream_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.286308 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o built in 0.296270 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o built in 0.384479 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.209737 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o.provides.build [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrn.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o.provides.build [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o built in 0.274615 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.223784 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o.provides.build [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o.provides.build [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o built in 0.250003 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_utils.mod cmake/atm/CMakeFiles/atm.dir/spmd_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sim_dat.mod cmake/atm/CMakeFiles/atm.dir/mo_sim_dat.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o built in 0.253424 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_lw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_lw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_setcoef.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprmc.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_taumol.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_sw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_sw.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o.provides.build [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o built in 0.303011 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o.provides.build [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/interpolation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o built in 0.932561 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 0.352171 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.463905 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o built in 0.942509 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/CNStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o built in 14.136305 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type.mod cmake/atm/CMakeFiles/atm.dir/stats_type.mod.stamp GNU [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o built in 0.411261 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/t_in_k_module.mod cmake/atm/CMakeFiles/atm.dir/t_in_k_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_wrap.mod cmake/atm/CMakeFiles/atm.dir/lapack_wrap.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o built in 1.161638 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/index_mapping.mod cmake/atm/CMakeFiles/atm.dir/index_mapping.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_parameter_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_parameter_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_semi_implicit.mod cmake/atm/CMakeFiles/atm.dir/clip_semi_implicit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calc_roots.mod cmake/atm/CMakeFiles/atm.dir/calc_roots.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ly93_pdf.mod cmake/atm/CMakeFiles/atm.dir/ly93_pdf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o built in 1.933275 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_tsdadg_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_tsdadg_pdf.mod.stamp GNU [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o built in 0.638179 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_utilities.mod cmake/atm/CMakeFiles/atm.dir/pdf_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sigma_sqd_w_module.mod cmake/atm/CMakeFiles/atm.dir/sigma_sqd_w_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calendar.mod cmake/atm/CMakeFiles/atm.dir/calendar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_operations.mod cmake/atm/CMakeFiles/atm.dir/matrix_operations.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hydromet_pdf_parameter_module.mod cmake/atm/CMakeFiles/atm.dir/hydromet_pdf_parameter_module.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 2.701548 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diagnose_correlations_module.mod cmake/atm/CMakeFiles/atm.dir/diagnose_correlations_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clmfatesparaminterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/clmfatesparaminterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nc_ncn_eqns.mod cmake/atm/CMakeFiles/atm.dir/nc_ncn_eqns.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.778711 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/est_kessler_microphys_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o built in 2.694029 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/generate_uniform_sample_module.mod cmake/atm/CMakeFiles/atm.dir/generate_uniform_sample_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/transform_to_pdf_module.mod cmake/atm/CMakeFiles/atm.dir/transform_to_pdf_module.mod.stamp GNU Target CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o built in 0.302842 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scream_abortutils.mod cmake/atm/CMakeFiles/atm.dir/scream_abortutils.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o built in 0.319208 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edloggingmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/edloggingmortalitymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/energyfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/energyfluxtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o.provides.build [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o built in 0.335052 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitytype.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitytype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesistype.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesistype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/soilstatetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/solarabsorbedtype.mod cmake/lnd/CMakeFiles/lnd.dir/solarabsorbedtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfacealbedotype.mod cmake/lnd/CMakeFiles/lnd.dir/surfacealbedotype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/topounitdatatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o built in 0.497212 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/waterfluxtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/waterstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakestatetype.mod cmake/lnd/CMakeFiles/lnd.dir/lakestatetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmtype.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologytype.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologytype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelldatatype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelldatatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpnitdentype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpnitdentype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentsomtype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentsomtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/betrbgcmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o built in 1.112067 seconds [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvrt.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvrt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/physconst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.517642 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_control_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o built in 0.429489 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o built in 1.091048 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o built in 0.306389 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glcdiagnosticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/glcdiagnosticsmod.mod.stamp GNU [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ioFileMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o built in 0.947677 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/landunitdatatype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/sedfluxtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o.provides.build [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o built in 0.303387 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeinterpmod.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o built in 0.535791 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_exchange.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_filter_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_filter_exchange.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.253432 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_landunit_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_exchange.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod cmake/atm/CMakeFiles/atm.dir/file_functions.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.768291 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.248044 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolation.mod cmake/atm/CMakeFiles/atm.dir/interpolation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/saturation.mod cmake/atm/CMakeFiles/atm.dir/saturation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbasetype.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.277115 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.253843 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initGridCellsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o built in 0.422032 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_tunable.mod cmake/atm/CMakeFiles/atm.dir/parameters_tunable.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o.provides.build [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o built in 0.236302 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_pdf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_reader.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o built in 0.318249 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopystatetype.mod cmake/lnd/CMakeFiles/lnd.dir/canopystatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnstatetype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o built in 0.530939 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_common.mod cmake/atm/CMakeFiles/atm.dir/gw_common.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o built in 0.730957 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndtype.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeuninterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeuninterpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/est_kessler_microphys_module.mod cmake/atm/CMakeFiles/atm.dir/est_kessler_microphys_module.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o built in 0.282732 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_importance_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o built in 0.394944 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edbtranmod.mod cmake/lnd/CMakeFiles/lnd.dir/edbtranmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcohortdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edcohortdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o.provides.build [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o built in 0.253155 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o.provides.build [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o built in 1.509956 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 2.858876 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod cmake/atm/CMakeFiles/atm.dir/physconst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_control_mod.mod cmake/atm/CMakeFiles/atm.dir/cam_control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_map_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_map_utils.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o built in 0.537421 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o built in 0.357802 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitymod.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitymod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physical_constants.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o built in 0.340484 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VerticalProfileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.788684 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/glb_verif_smry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o built in 0.280452 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reactionsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/reactionsfactory.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_manager.mod cmake/atm/CMakeFiles/atm.dir/time_manager.mod.stamp GNU [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glc2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o built in 0.578462 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iofilemod.mod cmake/atm/CMakeFiles/atm.dir/iofilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o built in 0.343427 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/time_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/filenames.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.634060 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynlandunitareamod.mod cmake/lnd/CMakeFiles/lnd.dir/dynlandunitareamod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o built in 0.311258 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reweightmod.mod cmake/lnd/CMakeFiles/lnd.dir/reweightmod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o built in 0.352659 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.387601 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o built in 0.288923 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o built in 0.340780 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o built in 0.281780 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o built in 0.291933 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_exchangemod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.377892 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.239285 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o built in 1.094665 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o built in 1.092695 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initgridcellsmod.mod cmake/lnd/CMakeFiles/lnd.dir/initgridcellsmod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/grid_class.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o built in 0.374888 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_type_utilities.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_variables.mod cmake/atm/CMakeFiles/atm.dir/stats_variables.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf_main.mod.stamp GNU [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o built in 0.682068 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o built in 0.413630 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_grads.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o built in 0.477851 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o built in 0.859209 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.319777 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 2.548706 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.359445 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.312426 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o built in 0.323320 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o.provides.build [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o built in 0.349273 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o built in 0.268128 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_reader.mod cmake/atm/CMakeFiles/atm.dir/input_reader.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o built in 0.445687 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 1.150289 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.346344 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_oro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.339848 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o built in 0.362652 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenstatetype.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/output_2D_samples_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o built in 0.304533 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_importance_sample_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_importance_sample_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmortalityfunctionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmortalityfunctionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edphysiologymod.mod cmake/lnd/CMakeFiles/lnd.dir/edphysiologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/verticalprofilemod.mod cmake/lnd/CMakeFiles/lnd.dir/verticalprofilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelfatesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelstubmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelstubmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndmod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.909606 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o built in 2.211093 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tsinti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_constants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o built in 0.418198 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_sediment_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o built in 0.278630 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o built in 0.295792 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/comsrf.mod cmake/atm/CMakeFiles/atm.dir/comsrf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituents.mod cmake/atm/CMakeFiles/atm.dir/constituents.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physical_constants.mod cmake/atm/CMakeFiles/atm.dir/physical_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/glb_verif_smry.mod cmake/atm/CMakeFiles/atm.dir/glb_verif_smry.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_utils.mod cmake/atm/CMakeFiles/atm.dir/time_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/filenames.mod cmake/atm/CMakeFiles/atm.dir/filenames.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_saturation.mod cmake/atm/CMakeFiles/atm.dir/wv_saturation.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/gas_wetdep_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_params.mod cmake/atm/CMakeFiles/atm.dir/mo_params.mod.stamp GNU [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o built in 0.448354 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/orbit.mod cmake/atm/CMakeFiles/atm.dir/orbit.mod.stamp GNU [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o built in 0.313087 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbt.mod cmake/atm/CMakeFiles/atm.dir/hirsbt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_init.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_init.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_init.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_init.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_rad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/grid_class.mod cmake/atm/CMakeFiles/atm.dir/grid_class.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_pdf_main.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Skx_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o built in 0.233954 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_grads.mod cmake/atm/CMakeFiles/atm.dir/output_grads.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_sfc_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_sfc_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_zt_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zt_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_sfc_module.mod cmake/atm/CMakeFiles/atm.dir/stats_sfc_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zt_module.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/corr_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o built in 1.098330 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/precipitation_fraction.mod cmake/atm/CMakeFiles/atm.dir/precipitation_fraction.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o built in 0.344674 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_convect.mod cmake/atm/CMakeFiles/atm.dir/gw_convect.mod.stamp GNU [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_front.mod cmake/atm/CMakeFiles/atm.dir/gw_front.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_oro.mod cmake/atm/CMakeFiles/atm.dir/gw_oro.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o built in 0.262187 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_2d_samples_module.mod cmake/atm/CMakeFiles/atm.dir/output_2d_samples_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpatchdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edpatchdynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_exchangemod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/lh_microphys_var_covar_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o built in 0.409285 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o.provides.build [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o built in 0.274616 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_constants.mod cmake/atm/CMakeFiles/atm.dir/mo_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 2.204176 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_control.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.793798 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/quadrature_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o built in 0.302012 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInventoryInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.446409 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionscentecacnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionscentecacnptype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o built in 0.405469 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gas_wetdep_opts.mod cmake/atm/CMakeFiles/atm.dir/gas_wetdep_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o built in 0.697474 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.267427 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.307505 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.281526 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcanopystructuremod.mod cmake/lnd/CMakeFiles/lnd.dir/edcanopystructuremod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.295905 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinventoryinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinventoryinitmod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.449335 seconds [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.279751 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.292473 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.286473 seconds [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.308147 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o built in 15.327474 seconds [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_explicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o built in 0.840413 seconds [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.581910 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.537354 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o built in 0.412338 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.417012 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o built in 0.484956 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.348561 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/applicationsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/applicationsfactory.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.272996 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columndatatype.mod cmake/lnd/CMakeFiles/lnd.dir/columndatatype.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.720070 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.470916 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/edinitmod.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.353731 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmainmod.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.387430 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplantrespphotosynthmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplantrespphotosynthmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 1.289318 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/numerical_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o built in 0.322599 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o built in 0.341192 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.412655 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o built in 0.384490 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/skx_module.mod cmake/atm/CMakeFiles/atm.dir/skx_module.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.569347 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.309307 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/corr_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/corr_varnce_module.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o built in 0.597991 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lh_microphys_var_covar_module.mod cmake/atm/CMakeFiles/atm.dir/lh_microphys_var_covar_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.544590 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.653290 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dimensions_mod.mod cmake/atm/CMakeFiles/atm.dir/dimensions_mod.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o built in 0.295069 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o built in 0.346488 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_control.mod cmake/atm/CMakeFiles/atm.dir/phys_control.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/element_state.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.510476 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quadrature_mod.mod cmake/atm/CMakeFiles/atm.dir/quadrature_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o built in 0.251355 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chem_utls.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.647343 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airmas.mod cmake/atm/CMakeFiles/atm.dir/mo_airmas.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o built in 0.309122 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveall.mod cmake/atm/CMakeFiles/atm.dir/mo_waveall.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveo3.mod cmake/atm/CMakeFiles/atm.dir/mo_waveo3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ps2str.mod cmake/atm/CMakeFiles/atm.dir/mo_ps2str.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setair.mod cmake/atm/CMakeFiles/atm.dir/mo_setair.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setcld.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.455972 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lymana.mod cmake/atm/CMakeFiles/atm.dir/mo_lymana.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o built in 1.979257 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelen.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelen.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.370561 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o built in 0.303872 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o built in 0.282331 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o built in 0.464896 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o.provides.build [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physics_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o built in 0.566634 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cldoptics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o built in 0.278167 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_helper_module.mod cmake/atm/CMakeFiles/atm.dir/advance_helper_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_explicit.mod cmake/atm/CMakeFiles/atm.dir/clip_explicit.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion.mod cmake/atm/CMakeFiles/atm.dir/diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o built in 1.389616 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mean_adv.mod cmake/atm/CMakeFiles/atm.dir/mean_adv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sponge_layer_damping.mod cmake/atm/CMakeFiles/atm.dir/sponge_layer_damping.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/fill_holes.mod cmake/atm/CMakeFiles/atm.dir/fill_holes.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mono_flux_limiter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o built in 0.327671 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edsurfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/edsurfaceradiationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pos_definite_module.mod cmake/atm/CMakeFiles/atm.dir/pos_definite_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropharvestpoolsmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropharvestpoolsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/turbulent_adv_pdf.mod cmake/atm/CMakeFiles/atm.dir/turbulent_adv_pdf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp3_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceresistancemod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceresistancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calc_pressure.mod cmake/atm/CMakeFiles/atm.dir/calc_pressure.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittverttranspmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittverttranspmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/numerical_check.mod cmake/atm/CMakeFiles/atm.dir/numerical_check.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosolmod.mod cmake/lnd/CMakeFiles/lnd.dir/aerosolmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/adg1_adg2_3d_luhar_pdf.mod cmake/atm/CMakeFiles/atm.dir/adg1_adg2_3d_luhar_pdf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtype.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o built in 0.675756 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/drydepvelocity.mod cmake/lnd/CMakeFiles/lnd.dir/drydepvelocity.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.350221 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dustmod.mod cmake/lnd/CMakeFiles/lnd.dir/dustmod.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/setup_clubb_pdf_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o built in 1.349237 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o built in 0.352226 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 1.759028 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o built in 2.032466 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o built in 0.323137 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/erosionmod.mod cmake/lnd/CMakeFiles/lnd.dir/erosionmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterbudgetmod.mod cmake/lnd/CMakeFiles/lnd.dir/waterbudgetmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanalbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanalbedomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o built in 0.221767 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 0.880786 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o built in 0.232196 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/cldaero_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_common.mod cmake/atm/CMakeFiles/atm.dir/dust_common.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.262172 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_state.mod cmake/atm/CMakeFiles/atm.dir/element_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chem_utls.mod cmake/atm/CMakeFiles/atm.dir/mo_chem_utls.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.353859 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.248736 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 1.686976 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o built in 0.206624 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_wp2_wp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o built in 0.847793 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mono_flux_limiter.mod cmake/atm/CMakeFiles/atm.dir/mono_flux_limiter.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 5.245768 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mixing_length.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o built in 2.102375 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_closure_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o built in 0.953331 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sfc_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/sfc_varnce_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_clubb_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_clubb_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/setup_clubb_pdf_params.mod cmake/atm/CMakeFiles/atm.dir/setup_clubb_pdf_params.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_0.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_driver_module.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_driver_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parallel_mod.mod cmake/atm/CMakeFiles/atm.dir/parallel_mod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/charge_neutrality.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o built in 0.243837 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mass_xforms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o built in 0.241146 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mean_mass.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o built in 0.233083 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_xsections.mod cmake/atm/CMakeFiles/atm.dir/mo_xsections.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rtlink.mod cmake/atm/CMakeFiles/atm.dir/mo_rtlink.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/set_cp.mod cmake/atm/CMakeFiles/atm.dir/set_cp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xm_wpxp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o built in 4.253134 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mixing_length.mod cmake/atm/CMakeFiles/atm.dir/mixing_length.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 3.884515 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.313842 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.291892 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 3.394890 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.221205 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o built in 0.270505 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod cmake/atm/CMakeFiles/atm.dir/charge_neutrality.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mass_xforms.mod cmake/atm/CMakeFiles/atm.dir/mo_mass_xforms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mean_mass.mod cmake/atm/CMakeFiles/atm.dir/mo_mean_mass.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.224012 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_closure_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_closure_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_api_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybrid_mod.mod cmake/atm/CMakeFiles/atm.dir/hybrid_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/control_mod.mod cmake/atm/CMakeFiles/atm.dir/control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.235889 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.240115 seconds [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/reduction_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o built in 0.322804 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.327347 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.263541 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod cmake/atm/CMakeFiles/atm.dir/gridgraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybvcoord_mod.mod cmake/atm/CMakeFiles/atm.dir/hybvcoord_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.314415 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.440703 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.221646 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.271434 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.306662 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 0.599821 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pmgrid.mod cmake/atm/CMakeFiles/atm.dir/pmgrid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_mod.mod cmake/atm/CMakeFiles/atm.dir/element_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 0.778266 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.288867 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o built in 0.207140 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 18.517482 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 5.764642 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.588244 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.438961 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.365491 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.428617 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 0.964658 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.430991 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.677880 seconds [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedtype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 0.967004 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o built in 0.272147 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o built in 0.353740 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.313230 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cube_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.494145 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod_base.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod_base.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.783540 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eos.mod cmake/atm/CMakeFiles/atm.dir/eos.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GrowthRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o built in 0.360060 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rgrid.mod cmake/atm/CMakeFiles/atm.dir/rgrid.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.380292 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o built in 1.105878 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.510202 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o built in 0.387898 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_clubb_core_module.mod cmake/atm/CMakeFiles/atm.dir/advance_clubb_core_module.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o built in 0.352072 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.692613 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 0.637259 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 0.613235 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o built in 0.476618 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 0.624886 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o built in 0.360611 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o built in 0.538505 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedtype_mod.mod cmake/atm/CMakeFiles/atm.dir/schedtype_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cube_mod.mod cmake/atm/CMakeFiles/atm.dir/cube_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/temperaturetype.mod cmake/lnd/CMakeFiles/lnd.dir/temperaturetype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o built in 0.500931 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/element_ops.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.303112 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynharvestmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynharvestmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o built in 0.736390 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/annualupdatemod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.418671 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/c14decaymod.mod cmake/lnd/CMakeFiles/lnd.dir/c14decaymod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 1.748690 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.381664 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonisofluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonisofluxmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedule_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.344627 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 0.871339 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cngapmortalitybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cngapmortalitybetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate1betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate1betrmod.mod.stamp GNU [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate2betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate2betrmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 15.414011 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate3betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate3betrmod.mod.stamp GNU [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 0.650852 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o built in 0.688238 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edge_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 0.745842 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o built in 1.056932 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod.mod.stamp GNU [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o built in 2.147095 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_ops.mod cmake/atm/CMakeFiles/atm.dir/element_ops.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zoltan_mod.mod cmake/atm/CMakeFiles/atm.dir/zoltan_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scalable_grid_init_mod.mod cmake/atm/CMakeFiles/atm.dir/scalable_grid_init_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geometry_mod.mod cmake/atm/CMakeFiles/atm.dir/geometry_mod.mod.stamp GNU [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/imex_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o built in 0.334183 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o built in 0.237849 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o built in 0.656801 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedule_mod.mod cmake/atm/CMakeFiles/atm.dir/schedule_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg2_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_derived_type_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o built in 1.511887 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2glcMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o built in 0.287605 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o built in 4.195463 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o built in 0.462049 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o built in 0.305158 seconds [ 73%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VOCEmissionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o built in 0.362935 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate1mod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o built in 0.327826 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o built in 1.020642 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/imex_mod.mod cmake/atm/CMakeFiles/atm.dir/imex_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o built in 1.835791 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mesh_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/precisioncontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/precisioncontrolmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_pio_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/edge_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o built in 0.741587 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystembalancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystembalancecheckmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gapmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/gapmortalitymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o built in 0.397975 seconds Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.268543 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/mesh_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/horizontal_interpolate.mod cmake/atm/CMakeFiles/atm.dir/horizontal_interpolate.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/readinitial.mod cmake/atm/CMakeFiles/atm.dir/readinitial.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/se_single_column_mod.mod cmake/atm/CMakeFiles/atm.dir/se_single_column_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridadjustmentsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridadjustmentsmod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TotalWaterAndHeatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o built in 0.695906 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_pio_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_pio_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod.mod cmake/atm/CMakeFiles/atm.dir/edge_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/interpolate_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.381864 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_solar_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.421361 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/solar_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 0.581501 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o built in 0.382411 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/input_data_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o built in 0.462445 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.429034 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o built in 0.727668 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_prop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 0.449011 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 0.706059 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.554943 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 0.828319 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.294579 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.354902 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.414043 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 1.449431 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o built in 0.521740 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.306980 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.420130 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.255720 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o built in 0.624838 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/bndry_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o built in 0.902245 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o built in 1.431974 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_interfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solar_parms.mod cmake/atm/CMakeFiles/atm.dir/mo_solar_parms.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solar_data.mod cmake/atm/CMakeFiles/atm.dir/solar_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4mod.mod cmake/lnd/CMakeFiles/lnd.dir/ch4mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_data_utils.mod cmake/atm/CMakeFiles/atm.dir/input_data_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilmoiststressmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilmoiststressmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_prop.mod cmake/atm/CMakeFiles/atm.dir/phys_prop.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyhydrologymod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mag_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o built in 0.217474 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrifDenitrifMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.673944 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowsnicarmod.mod cmake/lnd/CMakeFiles/lnd.dir/snowsnicarmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/euvac.mod cmake/atm/CMakeFiles/atm.dir/euvac.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/maintenancerespmod.mod cmake/lnd/CMakeFiles/lnd.dir/maintenancerespmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o built in 1.793774 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulation.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulation.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 0.679174 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_seto2.mod cmake/atm/CMakeFiles/atm.dir/mo_seto2.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tuv_inti.mod cmake/atm/CMakeFiles/atm.dir/mo_tuv_inti.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o built in 0.685079 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spedata.mod cmake/atm/CMakeFiles/atm.dir/spedata.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/activelayermod.mod cmake/lnd/CMakeFiles/lnd.dir/activelayermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o built in 0.820308 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_initfiles.mod cmake/atm/CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rad_solar_var.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o built in 0.905236 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/totalwaterandheatmod.mod cmake/lnd/CMakeFiles/lnd.dir/totalwaterandheatmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_esmf.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyninitcolumnsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dyninitcolumnsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o built in 0.285875 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_grid_support.mod cmake/atm/CMakeFiles/atm.dir/cam_grid_support.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o built in 0.848135 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod_base.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mag_parms.mod cmake/atm/CMakeFiles/atm.dir/mag_parms.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jshort.mod cmake/atm/CMakeFiles/atm.dir/mo_jshort.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jlong.mod cmake/atm/CMakeFiles/atm.dir/mo_jlong.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.239192 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.518434 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/snowhydrologymod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o built in 3.015180 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/lakefluxesmod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.408366 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 0.875691 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.263723 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ncdio_atm.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 0.793706 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o built in 0.518775 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_theta.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 1.070064 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_support.mod cmake/atm/CMakeFiles/atm.dir/cam_history_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dof_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o built in 0.298710 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/global_norms_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o built in 0.384115 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o built in 0.404917 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o built in 0.490966 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o built in 1.887696 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/croptype.mod cmake/lnd/CMakeFiles/lnd.dir/croptype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.331505 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o built in 0.742263 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elmfatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/elmfatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dof_mod.mod cmake/atm/CMakeFiles/atm.dir/dof_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/global_norms_mod.mod cmake/atm/CMakeFiles/atm.dir/global_norms_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_base.mod cmake/atm/CMakeFiles/atm.dir/viscosity_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hycoef.mod cmake/atm/CMakeFiles/atm.dir/hycoef.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cg_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.353119 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o built in 0.430749 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/pdelb0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 1.088613 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 1.171146 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.222230 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o built in 0.271755 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o built in 0.216043 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cg_mod.mod cmake/atm/CMakeFiles/atm.dir/cg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_si_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_si_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/solver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o built in 0.743718 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceradiationmod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.391165 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.591823 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 1.621624 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 2.898676 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 0.876109 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.369702 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 0.768530 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o built in 0.791049 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dyncropFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o built in 0.447297 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmmod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sl_advection.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o built in 0.385438 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/baregroundfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/baregroundfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakehydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/lakehydrologymod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o built in 0.324912 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/laketemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/laketemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AllocationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 1.120932 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o built in 0.811596 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o built in 0.584856 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_state_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_state_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadebgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadebgcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sl_advection.mod cmake/atm/CMakeFiles/atm.dir/sl_advection.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadecnmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadecnmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.210640 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfacealbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/surfacealbedomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogendynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogendynamicsmod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advance_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advection_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o built in 0.236023 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulationalm.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulationalm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologyfluxlimitmod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologyfluxlimitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegstructupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/vegstructupdatemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeophysmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncropfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncropfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o.provides.build [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o built in 1.537508 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 1.661375 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_driver_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 3.911138 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_implicit_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 1.644983 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o built in 0.992890 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.279088 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/prim_driver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_util_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.273816 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o built in 0.644184 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_grid.mod cmake/atm/CMakeFiles/atm.dir/dyn_grid.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 0.825131 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ref_pres.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.475506 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o built in 0.247858 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/namelist_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_data_flux.mod cmake/atm/CMakeFiles/atm.dir/co2_data_flux.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ref_pres.mod cmake/atm/CMakeFiles/atm.dir/ref_pres.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.334318 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers_suite.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.655341 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radae.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o built in 0.305830 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_mod.mod cmake/atm/CMakeFiles/atm.dir/namelist_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers_suite.mod cmake/atm/CMakeFiles/atm.dir/tracers_suite.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o built in 6.651019 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/allocationmod.mod cmake/lnd/CMakeFiles/lnd.dir/allocationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.558475 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o built in 2.093417 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 1.525642 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod cmake/atm/CMakeFiles/atm.dir/phys_grid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_comp.mod cmake/atm/CMakeFiles/atm.dir/dyn_comp.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.352897 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 1.314756 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/debug_info.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.238101 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittdecompmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittdecompmod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.779203 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radae.mod cmake/atm/CMakeFiles/atm.dir/radae.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o built in 2.412839 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.543047 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/gravity_waves_sources.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnallocationbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnallocationbetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.293502 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 2.742854 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.515559 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.290677 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.307764 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.315494 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.374193 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o built in 0.680844 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 0.644133 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o built in 3.078378 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 0.665381 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/readparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/readparamsmod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/soil_erod_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o built in 1.767832 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopytemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/canopytemperaturemod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/polar_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o built in 2.466609 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_funcsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_funcsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o built in 0.313133 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_synoz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/controlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o built in 0.394819 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sethet.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o built in 0.858871 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_msis_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o built in 0.402841 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o built in 0.377278 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug_util.mod cmake/atm/CMakeFiles/atm.dir/phys_debug_util.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hk_conv.mod cmake/atm/CMakeFiles/atm.dir/hk_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/debug_info.mod cmake/atm/CMakeFiles/atm.dir/debug_info.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o built in 0.377820 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat.mod cmake/atm/CMakeFiles/atm.dir/cldwat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gravity_waves_sources.mod cmake/atm/CMakeFiles/atm.dir/gravity_waves_sources.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/module_perturb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_types.mod cmake/atm/CMakeFiles/atm.dir/physics_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interp_mod.mod cmake/atm/CMakeFiles/atm.dir/interp_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sat_hist.mod cmake/atm/CMakeFiles/atm.dir/sat_hist.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/subcol_utils.F90 -o CMakeFiles/atm.dir/subcol_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o built in 0.855291 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/soil_erod_mod.mod cmake/atm/CMakeFiles/atm.dir/soil_erod_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 1.144826 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/polar_avg.mod cmake/atm/CMakeFiles/atm.dir/polar_avg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o built in 0.318352 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.451899 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.562899 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/dust_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.343966 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.588543 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/boundarydata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o built in 1.313067 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sethet.mod cmake/atm/CMakeFiles/atm.dir/mo_sethet.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_import_export.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 1.873104 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_msis_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_msis_ubc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_snoe.mod cmake/atm/CMakeFiles/atm.dir/mo_snoe.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_instmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_instmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o built in 0.712050 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.647284 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.263936 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpftfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpftfilemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o built in 0.279737 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o built in 0.697082 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cld_sediment.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o built in 1.721727 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o built in 0.319086 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pdepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/pdepstreammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/restfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_import_export.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/module_perturb.mod cmake/atm/CMakeFiles/atm.dir/module_perturb.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.195253 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o built in 0.487092 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o built in 0.977314 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/satellitephenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/satellitephenologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_model.mod cmake/atm/CMakeFiles/atm.dir/dust_model.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o built in 0.481933 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.826906 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/boundarydata.mod cmake/atm/CMakeFiles/atm.dir/boundarydata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/majorsp_diffusion.mod cmake/atm/CMakeFiles/atm.dir/majorsp_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_scream.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_scream.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rayleigh_friction.mod cmake/atm/CMakeFiles/atm.dir/rayleigh_friction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cld_sediment.mod cmake/atm/CMakeFiles/atm.dir/pkg_cld_sediment.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o built in 0.908803 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelvsfmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelvsfmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_gmean.mod cmake/atm/CMakeFiles/atm.dir/phys_gmean.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/physics_buffer.F90 -o CMakeFiles/atm.dir/physics_buffer.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 1.457565 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 2.804006 seconds [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o built in 0.711952 seconds [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 2.830287 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.435062 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 3.366234 seconds [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 1.484504 seconds [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.283032 seconds [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemDynMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 4.366195 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 1.128278 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.358572 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o built in 1.525447 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soiltemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/soiltemperaturemod.mod.stamp GNU [ 81%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.330371 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o.provides.build [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.562464 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build [ 81%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/init_hydrology.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.327731 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o built in 0.264908 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o built in 2.161241 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o built in 0.331716 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnecosystemdynbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnecosystemdynbetrmod.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.304217 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystemdynmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystemdynmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/read_volc_radiation_data.mod cmake/atm/CMakeFiles/atm.dir/read_volc_radiation_data.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radheat.mod cmake/atm/CMakeFiles/atm.dir/radheat.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.388512 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/qbo.mod cmake/atm/CMakeFiles/atm.dir/qbo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.648294 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_surfvals.mod cmake/atm/CMakeFiles/atm.dir/chem_surfvals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/short_lived_species.mod cmake/atm/CMakeFiles/atm.dir/short_lived_species.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.902174 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologymod.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o built in 0.364171 seconds [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.493527 seconds [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyNoDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 0.824895 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o.provides.build [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/clybry_fam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 2.084347 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.350394 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_rename.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_rename.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clybry_fam.mod cmake/atm/CMakeFiles/atm.dir/clybry_fam.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.308583 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologynodrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologynodrainagemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 1.359898 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 3.900138 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.496314 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o built in 0.628971 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o built in 0.485415 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/output_aerocom_aie.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.799992 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/cfc11star.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o built in 1.430189 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_apex.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o built in 0.446288 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airglow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o built in 0.414164 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airplane.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 2.729104 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU [ 83%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o built in 0.734659 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o [ 83%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.227187 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o built in 0.351933 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.471150 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_esmf.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_esmf.mod.stamp GNU [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.342271 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o.provides.build [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.366380 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 0.839730 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.448869 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_neu_wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o built in 0.734894 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o built in 1.603096 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_mct.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_mct.mod.stamp GNU [ 84%] Linking CXX static library liblnd.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /usr/bin/cmake -P CMakeFiles/lnd.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /usr/bin/cmake -E cmake_link_script CMakeFiles/lnd.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc liblnd.a CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o CMakeFiles/lnd.dir/ncdio_pio.F90.o CMakeFiles/lnd.dir/dynVarMod.F90.o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o CMakeFiles/lnd.dir/restUtilMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o built in 0.616874 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/rate_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o Target liblnd.a built in 0.188852 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib liblnd.a Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o built in 0.280621 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tropopause.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o Target liblnd.a built in 0.196069 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 84%] Built target lnd [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o built in 1.126152 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/slingo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.513041 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o built in 1.371373 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o built in 0.635465 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituent_burden.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.428121 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o built in 0.309353 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.437896 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o built in 0.501014 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/conv_water.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o built in 0.403544 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o built in 0.357290 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.585764 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o built in 0.452964 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/sslt_rebin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.401867 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o built in 0.427983 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o built in 0.398469 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.324557 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o built in 0.412016 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o.provides.build [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/forecast.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 1.998289 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sox_cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/sox_cldaero_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_cycle.mod cmake/atm/CMakeFiles/atm.dir/co2_cycle.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_constituents.mod cmake/atm/CMakeFiles/atm.dir/rad_constituents.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_gasaerexch.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_gasaerexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_newnuc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_newnuc.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o built in 0.529740 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_calcsize.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_aerocom_aie.mod cmake/atm/CMakeFiles/atm.dir/output_aerocom_aie.mod.stamp GNU [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_wateruptake.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o built in 2.306451 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cfc11star.mod cmake/atm/CMakeFiles/atm.dir/cfc11star.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_apex.mod cmake/atm/CMakeFiles/atm.dir/mo_apex.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airglow.mod cmake/atm/CMakeFiles/atm.dir/mo_airglow.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airplane.mod cmake/atm/CMakeFiles/atm.dir/mo_airplane.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_cph.mod cmake/atm/CMakeFiles/atm.dir/mo_cph.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_exp_sol.mod cmake/atm/CMakeFiles/atm.dir/mo_exp_sol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aero_settling.mod cmake/atm/CMakeFiles/atm.dir/mo_aero_settling.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jeuv.mod cmake/atm/CMakeFiles/atm.dir/mo_jeuv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ghg_chem.mod cmake/atm/CMakeFiles/atm.dir/mo_ghg_chem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_imp_sol.mod cmake/atm/CMakeFiles/atm.dir/mo_imp_sol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_neu_wetdep.mod cmake/atm/CMakeFiles/atm.dir/mo_neu_wetdep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_sad.mod.stamp GNU [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_solarproton.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o built in 0.939417 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.329614 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rate_diags.mod cmake/atm/CMakeFiles/atm.dir/rate_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tropopause.mod cmake/atm/CMakeFiles/atm.dir/tropopause.mod.stamp GNU [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o built in 1.527515 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.485140 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ebert_curry.mod cmake/atm/CMakeFiles/atm.dir/ebert_curry.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/slingo.mod cmake/atm/CMakeFiles/atm.dir/slingo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aoa_tracers.mod cmake/atm/CMakeFiles/atm.dir/aoa_tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_ozone_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_ozone_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituent_burden.mod cmake/atm/CMakeFiles/atm.dir/constituent_burden.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tidal_diag.mod cmake/atm/CMakeFiles/atm.dir/tidal_diag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_fraction.mod cmake/atm/CMakeFiles/atm.dir/cloud_fraction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_cover_diags.mod cmake/atm/CMakeFiles/atm.dir/cloud_cover_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/conv_water.mod cmake/atm/CMakeFiles/atm.dir/conv_water.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_update_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_update_mod.mod.stamp GNU [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.479162 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.441227 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.440457 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nudging.mod cmake/atm/CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_rebin.mod cmake/atm/CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers.mod cmake/atm/CMakeFiles/atm.dir/tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_defaults.mod cmake/atm/CMakeFiles/atm.dir/history_defaults.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_scam.mod cmake/atm/CMakeFiles/atm.dir/history_scam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 1.155674 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o.provides.build [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 1.960130 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.720207 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_coag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.478553 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 1.502530 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_wateruptake.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_wateruptake.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o built in 1.097416 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built in 1.240466 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solarproton.mod cmake/atm/CMakeFiles/atm.dir/mo_solarproton.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_rates.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_rates.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/exbdrift.mod cmake/atm/CMakeFiles/atm.dir/exbdrift.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o built in 2.337849 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o built in 1.000527 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldfrc2m.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o built in 0.555586 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv.mod cmake/atm/CMakeFiles/atm.dir/zm_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc_cam.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc_cam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop_bam.mod cmake/atm/CMakeFiles/atm.dir/ndrop_bam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice_cam.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setsox.mod cmake/atm/CMakeFiles/atm.dir/mo_setsox.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o built in 0.322398 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/camsrfexch.mod cmake/atm/CMakeFiles/atm.dir/camsrfexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_data.mod cmake/atm/CMakeFiles/atm.dir/tracer_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 1.207655 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.458467 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 9.793950 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.746360 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.593791 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.580954 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.571145 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.519318 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.394904 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.588724 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.353822 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.569349 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.475600 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.447307 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aer_opt.mod cmake/atm/CMakeFiles/atm.dir/modal_aer_opt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.797310 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.335925 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 1.133014 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.518905 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.509114 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.384114 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o built in 0.558360 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 0.938485 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o built in 0.907758 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o built in 1.342235 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o built in 0.471437 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iop_surf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o built in 0.957054 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_deposition.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_drydep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o built in 0.322393 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o built in 0.392450 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_convproc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 3.644245 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/seasalt_model.mod cmake/atm/CMakeFiles/atm.dir/seasalt_model.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/linoz_data.mod cmake/atm/CMakeFiles/atm.dir/linoz_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_cnst.mod cmake/atm/CMakeFiles/atm.dir/tracer_cnst.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 1.888637 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_extfrc.mod cmake/atm/CMakeFiles/atm.dir/mo_extfrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lightning.mod cmake/atm/CMakeFiles/atm.dir/mo_lightning.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_srf_emissions.mod cmake/atm/CMakeFiles/atm.dir/mo_srf_emissions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tgcm_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_tgcm_ubc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aer_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o built in 1.938983 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/cloud_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o built in 0.724825 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cospsimulator_intr.mod cmake/atm/CMakeFiles/atm.dir/cospsimulator_intr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation_data.mod cmake/atm/CMakeFiles/atm.dir/radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_state.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_state.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o built in 2.289518 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/check_energy.mod cmake/atm/CMakeFiles/atm.dir/check_energy.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug.mod cmake/atm/CMakeFiles/atm.dir/phys_debug.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat2m_macro.mod cmake/atm/CMakeFiles/atm.dir/cldwat2m_macro.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv_intr.mod cmake/atm/CMakeFiles/atm.dir/zm_conv_intr.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_shallow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/flux_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o built in 0.603099 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_drag.mod cmake/atm/CMakeFiles/atm.dir/gw_drag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_aero.mod cmake/atm/CMakeFiles/atm.dir/microp_aero.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o built in 0.420186 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_import_export.mod cmake/atm/CMakeFiles/atm.dir/atm_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o built in 1.073925 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_drydep.mod cmake/atm/CMakeFiles/atm.dir/mo_drydep.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_amicphys.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_amicphys.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 0.920641 seconds Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.731141 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.407209 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.443370 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_rad_props.mod cmake/atm/CMakeFiles/atm.dir/cloud_rad_props.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.388506 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radlw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o built in 0.469665 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hb_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o built in 0.400119 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_shallow.mod cmake/atm/CMakeFiles/atm.dir/convect_shallow.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.385435 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/stratiform.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.530702 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o built in 0.495963 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aerodep_flx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chlorine_loading_data.mod cmake/atm/CMakeFiles/atm.dir/chlorine_loading_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photoin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o built in 0.402673 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setext.mod cmake/atm/CMakeFiles/atm.dir/mo_setext.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/upper_bc.mod cmake/atm/CMakeFiles/atm.dir/upper_bc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radlw.mod cmake/atm/CMakeFiles/atm.dir/radlw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hb_diff.mod cmake/atm/CMakeFiles/atm.dir/hb_diff.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/macrop_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o built in 0.595967 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_deep.mod cmake/atm/CMakeFiles/atm.dir/convect_deep.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 0.905283 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/stepon.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o built in 1.610783 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aerodep_flx.mod cmake/atm/CMakeFiles/atm.dir/aerodep_flx.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o built in 0.575459 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.707908 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o built in 0.247215 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radsw.mod cmake/atm/CMakeFiles/atm.dir/radsw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/molec_diff.mod cmake/atm/CMakeFiles/atm.dir/molec_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stepon.mod cmake/atm/CMakeFiles/atm.dir/stepon.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/llnl_o1d_to_2oh_adj.mod cmake/atm/CMakeFiles/atm.dir/llnl_o1d_to_2oh_adj.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.575735 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 1.226704 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.850599 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/aero_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o built in 1.281081 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photo.mod cmake/atm/CMakeFiles/atm.dir/mo_photo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 1.205431 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o built in 1.437414 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation.mod cmake/atm/CMakeFiles/atm.dir/radiation.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.428118 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:83:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:84:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:45:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:44:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:43:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:42:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 2.010889 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_usrrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o built in 0.973292 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o built in 0.958930 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_gas_phase_chemdr.mod cmake/atm/CMakeFiles/atm.dir/mo_gas_phase_chemdr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waccm_hrates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o built in 0.477664 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waccm_hrates.mod cmake/atm/CMakeFiles/atm.dir/mo_waccm_hrates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.308831 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 0.847033 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o built in 5.768957 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_intr.mod cmake/atm/CMakeFiles/atm.dir/clubb_intr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o built in 1.294786 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cam_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 1.701668 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.532906 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_interface.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o built in 1.172001 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_physics.mod cmake/atm/CMakeFiles/atm.dir/restart_physics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o built in 3.225955 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_interface.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_interface.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o built in 6.878644 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.329665 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inidat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o built in 0.514189 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inidat.mod cmake/atm/CMakeFiles/atm.dir/inidat.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/startup_initialconds.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o built in 0.219220 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/startup_initialconds.mod cmake/atm/CMakeFiles/atm.dir/startup_initialconds.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o built in 2.160945 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physpkg.mod cmake/atm/CMakeFiles/atm.dir/physpkg.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/restart_dynamics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inital.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o built in 0.255702 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inital.mod cmake/atm/CMakeFiles/atm.dir/inital.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o built in 0.581429 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_dynamics.mod cmake/atm/CMakeFiles/atm.dir/restart_dynamics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o built in 0.458450 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_restart.mod cmake/atm/CMakeFiles/atm.dir/cam_restart.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/runtime_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o built in 0.476817 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_comp.mod cmake/atm/CMakeFiles/atm.dir/cam_comp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o built in 0.575408 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/runtime_opts.mod cmake/atm/CMakeFiles/atm.dir/runtime_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_mct.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o built in 0.683400 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_mct.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_mct.mod.stamp GNU [ 98%] Linking CXX static library libatm.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /usr/bin/cmake -P CMakeFiles/atm.dir/cmake_clean_target.cmake /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /usr/bin/cmake -E cmake_link_script CMakeFiles/atm.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libatm.a CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o CMakeFiles/atm.dir/physics_buffer.F90.o CMakeFiles/atm.dir/subcol_utils.F90.o CMakeFiles/atm.dir/buffer.F90.o Target libatm.a built in 0.190708 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libatm.a Target libatm.a built in 0.194842 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 98%] Built target atm make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl/CMakeFiles/e3sm.exe.dir/DependInfo.cmake --color= Scanning dependencies of target e3sm.exe make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o built in 0.137305 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/t_drv_timers_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/t_drv_timers_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o built in 0.201633 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.157095 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.450768 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.368015 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.186375 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.225191 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 1.122430 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 1.290088 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.410526 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.243272 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.771398 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o built in 0.373588 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.757289 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_atm_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_atm_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o built in 0.381855 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o built in 0.393168 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cplcomp_exchange_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cplcomp_exchange_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o built in 0.522042 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_glc_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o built in 0.205935 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_iac_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_iac_mod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.583781 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 0.888274 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.273269 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.416120 seconds Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.416513 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90:39:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o built in 0.484384 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_rest_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_rest_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o built in 0.412044 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o built in 1.068785 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_hist_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_hist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o built in 1.660186 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cime_comp_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cime_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o built in 0.183613 seconds [100%] Linking Fortran executable /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && /usr/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -Wl,-rpath,/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.8.0-gfortran/lib CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o -o /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe -L/usr/lib/gcc/x86_64-linux-gnu/10 ../atm/libatm.a ../lnd/liblnd.a ../ice/libice.a ../ocn/libocn.a ../rof/librof.a ../glc/libglc.a ../wav/libwav.a ../iac/libiac.a ../esp/libesp.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib/libcsm_share.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe built in 1.230990 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/CMakeFiles 0 real 240.87 user 703.79 sys 189.97 [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_RICO/run/atm.log.*.gz' gzip: projects/scratch/SCM_runs/test_RICO/run/atm.log.*.gz: No such file or directory [Pipeline] echo Not all logs were made for RICO. [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS